Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1326 ATGGGTAGAAAGAAGTCGACCGCCCGTGACGATGATAACGTGCCCACTGCATCTCAAGGCGGTGGGAAGTCGAAAAAAAAGGGGCTAGTGATCGACGATGATGAGTATTCTATTGGAACGGAGCTATCTGAGGAACCGCCGGCTCAAGAAGAGAAGCCTGCAGCGACGGGAAAGAAGAAAGGTAACAAAGGTAACTCGAAGGCTTCAAAAGCCGAGGACGAAGATTTAGAGAAGGCGATGGAAGATAATGATGATGATGTACCCGAAGTTGTGTTTACTGGGAAGAAGAAGGGGAAATCAAAAAAGGGTGGTGGGAACAGTGCGTTTACTAGTTCGAGCTTTGGTTTGCTTGGTGACGAGGAGGGTGGAGAACATGATGATGAAGACAAACAATCCTGCTTAAATGGTGGGGTGGACAATGACGACGACGACGAACCGTTTGCTACTTTTTCAGGCAAGAAGAAGTCCTCAAATGGTTCCAACAAGAAGGGCGGTAGCTTGTTCACTGCATCAGCTTTTGATGCTATAGACGAAGATGATGAAGGGGAGGTGATCGATAATTCTATAAAAGCCAGCCGTGAAGAGAACGATGACATGGATGAACCAGTTATTGCTATTACGGGTAAGAAAAAATCATCGAAAAGTAGCAAGAAGGCTGGTGCCTTATTCACAGCATCTAGTTTTGGCGATACCGACGGAGAGCAGTACAAAAATGAACAAGAAGATGGGGATGAAGATGTTGCTCCGATCGCTTTCTCAGGGAAGAAAAAGAAGTCATCGAAGTCTTCCAAGAAGGCTGTTAACTCATTTAGTGCAGCTTTTGCTGAAGAGGATGTGGAAGATGATCATTCTGTGCTCGAGTCTTCTAGAGCCGATGAAGATAAGGCTGAGGACGAAGATGTTTCTGTTGTATTTTCAGGTAAAAAGAAGTCTTCAAAGAAAAACAAGACCGCTACTACCAAAGCTAGTGATGATTTTGAATCTGTCAATGAAGAGCAACTTAGCGTAGTAGACAACAATAAAGGTAATAAGAGTGAAGAGGTGATTGAAAATTTAAAAAATAAAAAGAAGAAGAATAAAAAGAGCGGAAGAACTGCTCACGAAGAGGAAGATTTGGACAAGCTTCTTGCTGAGCTTGGGGAGGGGCCTACAGTAAAATGTGCTTCCCCTCAAGCTGAGGATGATAAAGTTCAGGCTTCTTCTGAAGTAGCTGCTCCTGCTACTGCTGTGGTGAAAAAAGGAGGGGAAGAAGAGACCATGGAGTCAGCTGCTGCAAAAAAGAAGAAGAATAAAAAGAGTGGAAGGACTGCTCAAGAAGAGGAAGATTTGGACAAGCTTCTAGCTGAGCTTGGGGAGGGGCCTCCAGTAAAACCTGCCTCCCCTCCTGCAGGGGATGATAAAGTTCAGGCTTCTTCTGAAGTAGCTGCTCCTGCTACTACTGTGGTGGAGAAAGAAGGGGAAGAAGAGACAATGGAGTCAGCTGCTGCAAAAAAGAAGAAAAAGAAAAAGGAGAAGGAGAAGGAGAAGAAGGCTGCAGCAGCAGCAGCTGCAAGTGCCCCTGATAATGAAAAGAATGAAGAAGTTAAACCCTATACCTCAGAATCCAGGAAAAATGATTCCAAGACTAAAGCGGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTGGCCCGAAGGCAAGAGGCTGAAGAGAGGAAGAAAAGGGAAGAGGAGGAGAGGCTAAGGAAGGAAGAAGAAGAGCGGCGTAGGCAAGAGGAATTTGAGAGGCAAGCAGAAGAGGCAAGACGTAAGAAGAAGGAAAGGGAGAAGGAGAAGCTCCAGAAGAAGAAGCAAGAAGGCAAATTATTAACTGGTAAGCAAAAGGAAGAAGCTCGTCGTTTGGAGGCCATGAGGAAGCAGTTTCTTTCTGGTACAGGGGGTGTCACACTTCCTCCCGGGGACTCTGGGGTACCGGCCAAACGACCCATCTATCAGACAAAAAAGTCAAAACAAACTCATCATCACCAGAATGGCACTGCCCCTGTTAAGGCAGATGAAGATGTGGAAGCAAAGGAAAATCTGGAGACCACTCCTGATGCAGAGTCATTGGAACCAGAGAAGGTTGAAGTGGTTGAGTCAGTGCAGTATGAGGACAAAGTTAAACCGTCTGAAGATCTTCAAGAGGAAGAAATTGAAGAGGATGAATGGGATGCAAAGAGTTGGGATGATGTTAATTTAAATGGAAAAGGTGCATTTGCTGATGAGGAGGCTGACTCTGAACCAGAACCTGTAGTGAAAAAGGAGATAAAAAATGCTGCACCCCCAGCTGTTGTGAAGTCAACAGGCACAACCAAGAAAGCTGCTTCTCAGCCTCCAACTGAGCAAATCGAAAGTAAAAGGCAGGTTGAGAAGCAACCCCCTAAGCAGGATGGGCATCTACCGCCAAATTCAGCTGTTCCTTCTCAACCAAGTGGAGAGAACCTTCGTTCCCCAATTTGCTGTATTATGGGCCATGTGGACGCTGGTAAAACTAAGCTGCTGGATTGTATTCGACGTACTAATGTTCAGGAAGGTGAGGCTGGTGGCATCACGCAACAGATTGGTGCTACATACTTTCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTAAAAGCTGATGCGAAGCTGAAAGTTCCAGGTCTACTAGTGATAGATACTCCTGGGCATGAATCTTTTACTAACTTAAGGTCAAGGGGTTCAGGTCTATGTGATATTGCAATTCTAGTTGTTGACATTATGCATGGATTACAACCTCAGACAATAGAATCGCTCAATCTATTGAAAATGAGGAATACAGAATTCATAGTTGCATTGAACAAAGTTGACAGACTTTATGGTTGGAAAGCATGCACTAATTCTCCAGTTGTTAAGGCAATGAAGCAGCAAACCAAGGATGTGCAAAATGAGTTCAATATGAGAGTTACTCAGACTATCACTCAATTCAAGGAACAGGGGTTAAACACTGAATTGTACTATAAAAACAAGGAAATGGGAGAAACCTTCAGTATTGTACCTACCAGTGCTACAAGTGGTGAAGGTATCCCGGATTTGTTATTGTTGTTGGTTCAATGGACACAAAAAACAATGGCTCAGCAACTTACATACAGTGATGAAGTGCAGTGCACAGTTTTGGAGGTTAAGGTTGTTGAAGGTCATGGGACAACTATTGATGTTGTCTTGGTTAATGGTGTTCTTCATGAAGGAGATCAAATAGTTGTTTGTGGAATGCAGGGGCCTATTGTTACTACAATTCGAGCTCTATTGACACCTCATCCTATGAAGGAGCTCCGTGTTAAGGGAACATATCTCCATCATAAAGAAATTAAAGCTGCTATGGGTATCAAAATCACCGCCCAGGGGCTTGAACATGCTATTGCTGGCACTGCTTTACATGTAGTGATGCCTGACGATGATTTAGAAGATGTTAAAGATGCAGCTATGGAAGATATGAAGACAGTCATGGGCAGGATTGACAAGAGTGGTGAGGGAGTTTGTGTACAGGCATCCACCCTTGGTTCTTTGGAAGCATTGCTGGAGTTTTTGAAAACACCAGAAGTGAATATTCCTAAGGATCCAATTGTTTTGGGAGTTGATATTCTTGAAGGTGTTTTAAAGATTGGGACACCAATTTGTATTCCTTCCAGAGATTACATTGATATCGGTCGCATTGCTTCCATTGAAAATAACAAAAAACCTGTTGATTATGCCAAGAAAGGGCAGCAAGTAGCCATTAAGATTGTTGGCAACAATTCGGAGGAACAACAAAAAATGTTCGGGAGGCATTTTGAGATTGATGACGAACTTGTAAGCCATATTACAAGGAGATCTATCGATATTCTCAAAGCTAATTATCGGGATGAACTGACTATGGAGGAATGGAGGCTGGTTGCGAAATTGAAAAACGTTTTCAGGATACAATGA 3954 0.4365 MGRKKSTARDDDNVPTASQGGGKSKKKGLVIDDDEYSIGTELSEEPPAQEEKPAATGKKKGNKGNSKASKAEDEDLEKAMEDNDDDVPEVVFTGKKKGKSKKGGGNSAFTSSSFGLLGDEEGGEHDDEDKQSCLNGGVDNDDDDEPFATFSGKKKSSNGSNKKGGSLFTASAFDAIDEDDEGEVIDNSIKASREENDDMDEPVIAITGKKKSSKSSKKAGALFTASSFGDTDGEQYKNEQEDGDEDVAPIAFSGKKKKSSKSSKKAVNSFSAAFAEEDVEDDHSVLESSRADEDKAEDEDVSVVFSGKKKSSKKNKTATTKASDDFESVNEEQLSVVDNNKGNKSEEVIENLKNKKKKNKKSGRTAHEEEDLDKLLAELGEGPTVKCASPQAEDDKVQASSEVAAPATAVVKKGGEEETMESAAAKKKKNKKSGRTAQEEEDLDKLLAELGEGPPVKPASPPAGDDKVQASSEVAAPATTVVEKEGEEETMESAAAKKKKKKKEKEKEKKAAAAAAASAPDNEKNEEVKPYTSESRKNDSKTKAADKKVPKHVREMQEALARRQEAEERKKREEEERLRKEEEERRRQEEFERQAEEARRKKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRKQFLSGTGGVTLPPGDSGVPAKRPIYQTKKSKQTHHHQNGTAPVKADEDVEAKENLETTPDAESLEPEKVEVVESVQYEDKVKPSEDLQEEEIEEDEWDAKSWDDVNLNGKGAFADEEADSEPEPVVKKEIKNAAPPAVVKSTGTTKKAASQPPTEQIESKRQVEKQPPKQDGHLPPNSAVPSQPSGENLRSPICCIMGHVDAGKTKLLDCIRRTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLQPQTIESLNLLKMRNTEFIVALNKVDRLYGWKACTNSPVVKAMKQQTKDVQNEFNMRVTQTITQFKEQGLNTELYYKNKEMGETFSIVPTSATSGEGIPDLLLLLVQWTQKTMAQQLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTALHVVMPDDDLEDVKDAAMEDMKTVMGRIDKSGEGVCVQASTLGSLEALLEFLKTPEVNIPKDPIVLGVDILEGVLKIGTPICIPSRDYIDIGRIASIENNKKPVDYAKKGQQVAIKIVGNNSEEQQKMFGRHFEIDDELVSHITRRSIDILKANYRDELTMEEWRLVAKLKNVFRIQ 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1326 1317 Pfam Elongation factor Tu domain 2 1064 1141 IPR004161 GO:0005525
Lele48g1326 1317 FunFam Eukaryotic translation initiation factor 5B 1188 1317 - -
Lele48g1326 1317 FunFam Eukaryotic translation initiation factor 5B 819 1047 - -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 1 823 - -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 363 377 - -
Lele48g1326 1317 FunFam eukaryotic translation initiation factor 5B 1048 1167 - -
Lele48g1326 1317 Pfam Elongation factor Tu GTP binding domain 829 1037 IPR000795 GO:0003924|GO:0005525
Lele48g1326 1317 TIGRFAM small_GTP: small GTP-binding protein domain 830 956 IPR005225 GO:0005525
Lele48g1326 1317 CDD IF2_eIF5B 828 1038 - -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 482 499 - -
Lele48g1326 1317 PRINTS GTP-binding elongation factor signature 945 954 IPR000795 GO:0003924|GO:0005525
Lele48g1326 1317 PRINTS GTP-binding elongation factor signature 909 920 IPR000795 GO:0003924|GO:0005525
Lele48g1326 1317 PRINTS GTP-binding elongation factor signature 893 903 IPR000795 GO:0003924|GO:0005525
Lele48g1326 1317 PRINTS GTP-binding elongation factor signature 829 842 IPR000795 GO:0003924|GO:0005525
Lele48g1326 1317 MobiDBLite consensus disorder prediction 414 448 - -
Lele48g1326 1317 Coils Coil 549 620 - -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 522 634 - -
Lele48g1326 1317 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 515 1200 IPR015760 -
Lele48g1326 1317 CDD aeIF5B_II 1049 1159 - -
Lele48g1326 1317 SUPERFAMILY Translation proteins 1201 1316 IPR009000 -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 151 167 - -
Lele48g1326 1317 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1150 1200 IPR036925 -
Lele48g1326 1317 Gene3D Translation factors 1048 1169 - -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 185 207 - -
Lele48g1326 1317 Coils Coil 484 516 - -
Lele48g1326 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 826 1116 IPR027417 -
Lele48g1326 1317 Gene3D - 820 1047 IPR027417 -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 676 723 - -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 276 307 - -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 750 764 - -
Lele48g1326 1317 Gene3D Translation factors 1187 1317 - -
Lele48g1326 1317 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 825 1041 IPR000795 GO:0003924|GO:0005525
Lele48g1326 1317 MobiDBLite consensus disorder prediction 779 793 - -
Lele48g1326 1317 MobiDBLite consensus disorder prediction 217 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1326 Lele-ChrLele48 17469528 17477688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1326 1 42 Eukaryotic Initiation Factors Gene Family AT1G76810 65.217 7.13e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0110 45 1011883 1014405 Lele48g1326 48 17469528 17477688 hybridization
Lele46g0135 46 782010 784463 Lele48g1326 48 17469528 17477688 hybridization