LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g1322	ATGATGTCCCTGGGAGATCCGAGTGTGTTAGAGACCCCCTCCGGCGAGCCCACCATGACCGCGACTGCGCCCCCAGAAGCCGCGGCTTCCGTCGACGGTGCTGCAGAAATCGAGATGATGGATAGTGTTGTTGGCTTGGATGCAACGAATTCAGGTGATGATATCGATCAGAAGAGAAGCGGTGGTGGCGGCGGAGGCGGAGGAGGAGGAGGGAACCGGTGGCCTCGCCAGGAAACTTTTGCTCTCTTGAAGATAAGGTCAGATATGGACGCTGCGTTTCGGGATTCCAGTCTTAAAGGTCCACTTTGGGAACAAGTTTCAAGGAAAATGGCAGAACTTGGATATAATAGAAGCTCAAAGAAGTGCAAGGAGAAGTTCGAGAACGTGTACAAGTACCACAAGAGAACTAAAGAAAGCAGAAGTGGTAAACCAGAAGGCAAAACTTACAAATTCTTCGACCAATTACAAGCCCTTGAAAATAAATTAAATCTCTCTCCATTAAAACCACCACATCCTCCGCCACAGCCACAGCCACAGCCACAACCTTCTTTCCAAACATGGCCTTGCAATATTAATAATGATCCTATCACCACTACTATCTCTTACGTCACTACCATTCCATCCACTGTAAACCCTACTCTCATTTCTCCTCCTCCGCCGCCACCGGCGAATGTTGTTGCTGCCACCATCACCAACCCTAGGAATTTGTCAAACAAGAGCCTTTTCTCGTCTATCACGACCACCTCGACCTCGTCGTCAACTGCTTCCGATGAGGACATGGAAGAGAAGTACAGGAAGAAGAGAAAGATGAAGGACTACTTCCGGAGGCTGACGAGGCAAGTGCTGGCGAAGCAGGAGGAGATGCAGAAGAGGTTTCTAGAAGCCGTAGAGAAAAGAGAGCGTGAAAGAGAAGCACAGTTAGAAGCTTGGAGAACTCAAGAAATGGCCAGGATCAATAGAGAGCATGACATTCTAGTCCAAGAAAGATCCACCGCGGCAGCCAAGGACGCCGCCGTCATCGCTTTCCTCCAGAAGTTATCCGGCGGCCAGCAAAATCCGGCACCGCCAACGCCACCTCCTCCGGCTCAACCACAACCCGTAATGCAAGTAGTAGAACCTCGTGAACAACTGCAATTGCTGCCTATTGACAAGAAGTTTGAAATGCAGAAAGTGATGAACATAAACAACGGCCATAACAATCCAGTGAGTGTCTCTAATTCTTCTTCTTCTTCTTCAAGGTGGCCAAAGGCAGAAGTTCATGCACTGATAAGGCTAAGGACGAGCATGGACCCAAAGTATCAAGAGAACGGACCGAAAGGGCCGCTATGGGAGGACATATCGGCCGGAATGCAGAGGCTAGGGTACAATCGGAGCTCCAAGAGGTGTAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGCAAAGGCGTGAGGATAGCAAGACTTGTCCTTACTTTCATGAGCTCGAAGCTCTTTACAAAGAGAAGAGCAAAACCGACTTCGGGGCCGGCGGAAATCCGAATCACGAAATGATGATGGAGCCATTGATGGTGCAGCCGGAGCAGCAATGGAGGCCGCCTCCACCACATGCGGAGGGGGAGGGGGAGGGTGGTGCTGCGAGGGAGAATGCAAATGATATCTTTCAGTTCGAAGCGAAAGAACGAGGGGGAGAAGAGGAGGAGGAGATGGAAGAAGTAGAAGACGATGATGTTATGGAAGATGAAGAGAGTATGGAAGATGATCATGAAGAAGAAGGACGTTATGAAGTTGCAGCGACGAATAACAAACTTCCTTCAGTGGATACTGTTGAATGA	1836	0.4935	MMSLGDPSVLETPSGEPTMTATAPPEAAASVDGAAEIEMMDSVVGLDATNSGDDIDQKRSGGGGGGGGGGGNRWPRQETFALLKIRSDMDAAFRDSSLKGPLWEQVSRKMAELGYNRSSKKCKEKFENVYKYHKRTKESRSGKPEGKTYKFFDQLQALENKLNLSPLKPPHPPPQPQPQPQPSFQTWPCNINNDPITTTISYVTTIPSTVNPTLISPPPPPPANVVAATITNPRNLSNKSLFSSITTTSTSSSTASDEDMEEKYRKKRKMKDYFRRLTRQVLAKQEEMQKRFLEAVEKREREREAQLEAWRTQEMARINREHDILVQERSTAAAKDAAVIAFLQKLSGGQQNPAPPTPPPPAQPQPVMQVVEPREQLQLLPIDKKFEMQKVMNINNGHNNPVSVSNSSSSSSRWPKAEVHALIRLRTSMDPKYQENGPKGPLWEDISAGMQRLGYNRSSKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKSKTDFGAGGNPNHEMMMEPLMVQPEQQWRPPPPHAEGEGEGGAARENANDIFQFEAKERGGEEEEEMEEVEDDDVMEDEESMEDDHEEEGRYEVAATNNKLPSVDTVE	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g1322	611	MobiDBLite	consensus disorder prediction	166	183	-	-
	Lele48g1322	611	Gene3D	-	74	135	-	-
	Lele48g1322	611	Gene3D	-	414	475	-	-
	Lele48g1322	611	CDD	GT1	72	137	-	-
	Lele48g1322	611	FunFam	Trihelix transcription factor GT-2	414	475	-	-
	Lele48g1322	611	ProSiteProfiles	Myb-like domain profile.	72	130	IPR001005	-
	Lele48g1322	611	SMART	sant	410	472	IPR001005	-
	Lele48g1322	611	SMART	sant	70	132	IPR001005	-
	Lele48g1322	611	PANTHER	FI21293P1	50	539	-	-
	Lele48g1322	611	Pfam	Myb/SANT-like DNA-binding domain	72	158	IPR044822	-
	Lele48g1322	611	Pfam	Myb/SANT-like DNA-binding domain	412	499	IPR044822	-
	Lele48g1322	611	CDD	GT1	413	477	-	-
	Lele48g1322	611	ProSiteProfiles	Myb-like domain profile.	406	470	IPR001005	-
	Lele48g1322	611	Coils	Coil	293	313	-	-
	Lele48g1322	611	MobiDBLite	consensus disorder prediction	163	189	-	-
	Lele48g1322	611	FunFam	Trihelix transcription factor GT-2	74	135	-	-
	Lele48g1322	611	MobiDBLite	consensus disorder prediction	528	611	-	-
	Lele48g1322	611	MobiDBLite	consensus disorder prediction	564	590	-	-
	Lele48g1322	611	MobiDBLite	consensus disorder prediction	1	75	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g1322	Lele-ChrLele48	17419536	17424226	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g1322	64	530	Trihelix Transcription Factor Family	AT1G76890	50.688	6.06e-144	427

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Lele48g1322		Myb_DNA-bind_4	1.8e-21	CL0123