Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1313 ATGGCAAATCTTGCTAGCTACGGGAATGCCGACCGTGACTTAGAGCAGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCTCTGATATATTCTGGTCAAGGTGGCCGGTCCAAAATTGATGGGCCGAGTGATGGGGGTCTCTATCTTGATGATAACAGAGACTTTGCATCAAGTAGTCCAAGTGAAAGTTCAGTTAGTACACTAGATATTAAATCTCCTGATACTTCTGTGAATTCTAATCCTAATACTGCTTCAAAGTCCTTTAGACAAGTGAAGCCTGTGAATTCTGAAAGATCTCATTCACAATTAGACCCTTCAAATATGCAAGCAAAAGGATCTGGTTTAGATGTTTTTCGAGTTAGTGTTTCAACTGCCCCCAGCTCATCAAGTCATGGATCTGCCCCTGATGACTGTGATGCTCTGGGTGATGTATACATATGGGGGGAGGTTATCCCTGAGAATGTTATGGGAGTTGGTGGAGATAAAATTTTCAATCACTTCAGTCCAAGGGTAGATGTGCTTTTGCCCAGGCCACTGGAATCCAATGTAGTTTTAGACGTACATCATATAGCATGTGGTGTTAAACATGCTGCACTAGTCACAAGGCAAGGTGAAGTATTTACTTGGGGTGAAGAATCTGGAGGACGTCTAGGCCATGGTGTTGAGAACAATGTGGTTCAACCTCGTCTAGTTGAAGCTTTGGCTTCTATGACTGTTGATTTTGTTGCTTGTGGGGAGTTTCACACCTGCGCTATTACAATGGCTGGGGAACTATATACTTGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTGACGTAAGTCATTGGATACCAAAACGAATTTCAGGACTACTTGAGGGACTTCAAGTTGCTTTTGTCTCTTGTGGTCCATGGCACTCAGCCTTGATAACTTCAACGGGGCAACTCTTCACATTTGGTGATGGAACATTTGGTGTCCTGGGCCATGGAGATAGGGAGAATGTTTCATATCCTAGGGAAGTACAATCATTGTCAGGGTTAAGAACATTAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTGGTCGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCTGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGATGCCCGACTTGTACCAACTTGTGTCCCTTTGCTCATTGATTACACTTTTTATAACATTGCTTGTGGCCACAGTTTGACAGTGGGCCTCACAACATCAGGACGTGTCTTTACAATGGGAAGCACTGTTTACGGTCAGCTTGGCAAGCCACTGTCTGATGGAAAGTTGCCCTGCTTGGTCGAAGACAAGCTTTCTGAAGAATGTGTTGAAGAAATTGCATGCGGTGCATATCATGTTGCAGTTTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCTAATGGGAGGTTGGGTCATGGGGATGTTGAAGATAGAAAAAACCCAACTTTGGTTGAAGCTTTGAAAGATAGACATGTTAAAAATATTGCGTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTATCGGGTGCTGAACAGTCTCAATGCTGTACTTGTAGACAGCCATTTGGCTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGGCTTGTGCATTGCCACTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCTCTGGCCCCTAATCCTGGAAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGATGGCAGAAGCTGGCATTAATAATAGAAGGAATGCCATGCCTCGTTTGTCTGGTGAAAACAAGGACAGGTTAGATAAGTCTGAGGTCAGGTTGGCCAAGTCACCCGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCGGCTAGACAAGGGAAGAAGACTGATACATTCTCTCTGGTTCACACCTCACAAACCCCTTCGCTGCAACTGAAAGATGTTGTTTTGTCTACTTCTGTTGATCTGAAACGCGCAGCTCCAAGGCCAGTTCTGACATCATCTGGGGTAAGCTCCAGGTCTGTGTCCCCATTTTCTAGAAGACCAAGTCCACCTCGTTCAGCTACGCCTATACCAACAACATCAGGACTTTCTTTCTCAAAGAGTCTAAATGATAGTCTGAAGAAAACCAACGAACTTTTAAATCATGAAGTGCTGAATTTACGCACTCAGGTTGAGAGCCTGAGAAAAAGGTATGATTTGCAAGAATTAGAGCTTCAAAGGGCAGAAAAGAGAACTCAGGAAGCTATGGCAATGGCTGCTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTTAAAGATCTAGCTGAGAGGCTACCTCCAGGATCTTATGACGCTGACAGCATCTGGCCAGCTTACCTGCCAAATGGTTTGGAGCCAAATGGCGTCCACTATCCTGACTCGAATTGGGAGGGACATACCAGAGCAGAGTCAATCAGTGGATCTAGCCTAGCTCTTGAGTCTTCTCTATTCCACAAAAACGAGGTCACAGGAACTTACACAACCAATCCTTACCAGCAAAACCGGGTGCTTGTGCCTTCCCATGGGACAAATGAATACCCAAATGTTATACTTGCAAATGGCGGTGTGTTTCAGGCAACTAGCAGTAGCATATTAGATACTGCTGATGGCAGGAATTCTGAGCCTCTCCAAGATGGCGAGAGTGGTTCAAGATCAAGGAATTCTGTACTGGCTGCTAATAGTAATCAAATTGAGGCAGAATGGATTGAGCAGTATGAACCTGGGGTGTATATAACACTCATGGCTTTAAGCGATGGAGCGAGAGATCTAAAACGAGTGCGCTTCAGCCGACGCAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCTGAGAATCGTGAGAAGGTATATGAAAGGTACAATGTCCGCAGTAGCACTGAGAAGTCTTCGAGCCTAGCAGCTCGTGTGCCGGAAGGTGCAGTTTCACCTGTTTCATAA 3078 0.4454 MANLASYGNADRDLEQICKDKVEAEVWIAGLKALIYSGQGGRSKIDGPSDGGLYLDDNRDFASSSPSESSVSTLDIKSPDTSVNSNPNTASKSFRQVKPVNSERSHSQLDPSNMQAKGSGLDVFRVSVSTAPSSSSHGSAPDDCDALGDVYIWGEVIPENVMGVGGDKIFNHFSPRVDVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVENNVVQPRLVEALASMTVDFVACGEFHTCAITMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGLLEGLQVAFVSCGPWHSALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVQSLSGLRTLAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLVPTCVPLLIDYTFYNIACGHSLTVGLTTSGRVFTMGSTVYGQLGKPLSDGKLPCLVEDKLSEECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKNPTLVEALKDRHVKNIACGSNYSAAICLHKWVSGAEQSQCCTCRQPFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKMAEAGINNRRNAMPRLSGENKDRLDKSEVRLAKSPVPSNMDLIKQLDSKAARQGKKTDTFSLVHTSQTPSLQLKDVVLSTSVDLKRAAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSLNDSLKKTNELLNHEVLNLRTQVESLRKRYDLQELELQRAEKRTQEAMAMAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGSYDADSIWPAYLPNGLEPNGVHYPDSNWEGHTRAESISGSSLALESSLFHKNEVTGTYTTNPYQQNRVLVPSHGTNEYPNVILANGGVFQATSSSILDTADGRNSEPLQDGESGSRSRNSVLAANSNQIEAEWIEQYEPGVYITLMALSDGARDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTEKSSSLAARVPEGAVSPVS 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1313 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 210 261 IPR000408 -
Lele48g1313 1025 SUPERFAMILY FYVE/PHD zinc finger 536 606 IPR011011 -
Lele48g1313 1025 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 355 365 IPR000408 -
Lele48g1313 1025 Pfam Transcription factor BRX N-terminal domain 786 819 IPR027988 -
Lele48g1313 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 483 IPR000408 -
Lele48g1313 1025 CDD FYVE_like_SF 545 598 - -
Lele48g1313 1025 MobiDBLite consensus disorder prediction 912 936 - -
Lele48g1313 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 316 IPR000408 -
Lele48g1313 1025 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 540 602 IPR017455 -
Lele48g1313 1025 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 196 206 IPR000408 -
Lele48g1313 1025 PRINTS Chromosome condensation regulator RCC1 signature 212 228 IPR000408 -
Lele48g1313 1025 PRINTS Chromosome condensation regulator RCC1 signature 262 278 IPR000408 -
Lele48g1313 1025 PRINTS Chromosome condensation regulator RCC1 signature 319 333 IPR000408 -
Lele48g1313 1025 PRINTS Chromosome condensation regulator RCC1 signature 421 439 IPR000408 -
Lele48g1313 1025 PRINTS Chromosome condensation regulator RCC1 signature 479 500 IPR000408 -
Lele48g1313 1025 PRINTS Chromosome condensation regulator RCC1 signature 303 319 IPR000408 -
Lele48g1313 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 148 209 IPR000408 -
Lele48g1313 1025 SMART fyve_4 534 603 IPR000306 GO:0046872
Lele48g1313 1025 Pfam FYVE zinc finger 536 602 IPR000306 GO:0046872
Lele48g1313 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
Lele48g1313 1025 SUPERFAMILY RCC1/BLIP-II 147 537 IPR009091 -
Lele48g1313 1025 MobiDBLite consensus disorder prediction 696 713 - -
Lele48g1313 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 431 IPR000408 -
Lele48g1313 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 317 365 IPR000408 -
Lele48g1313 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 210 258 IPR000408 -
Lele48g1313 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 485 532 IPR000408 -
Lele48g1313 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 262 313 IPR000408 -
Lele48g1313 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 431 480 IPR000408 -
Lele48g1313 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 379 426 IPR000408 -
Lele48g1313 1025 MobiDBLite consensus disorder prediction 1003 1025 - -
Lele48g1313 1025 Pfam Transcription factor regulating root and shoot growth via Pin3 945 1000 IPR013591 -
Lele48g1313 1025 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 303 313 IPR000408 -
Lele48g1313 1025 FunFam PH, RCC1 and FYVE domains-containing protein 1 370 541 - -
Lele48g1313 1025 MobiDBLite consensus disorder prediction 60 115 - -
Lele48g1313 1025 Gene3D - 373 532 IPR009091 -
Lele48g1313 1025 Coils Coil 735 811 - -
Lele48g1313 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 533 609 IPR013083 -
Lele48g1313 1025 FunFam PH, RCC1 and FYVE domains-containing protein 1 119 369 - -
Lele48g1313 1025 ProSiteProfiles BRX domain profile. 946 1001 IPR013591 -
Lele48g1313 1025 Gene3D - 81 372 IPR009091 -
Lele48g1313 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 317 368 IPR000408 -
Lele48g1313 1025 MobiDBLite consensus disorder prediction 56 117 - -
Lele48g1313 1025 MobiDBLite consensus disorder prediction 693 728 - -
Lele48g1313 1025 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1313 Lele-ChrLele48 17354405 17359426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1313 947 1015 Major Intrinsic Protein MIP AT1G31880 47.826 2.25e-14 74.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0120 45 1122285 1127534 Lele48g1313 48 17354405 17359426 hybridization
Lele46g0144 46 857955 863014 Lele48g1313 48 17354405 17359426 hybridization