Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1301 ATGGTGTCGTTTCTTCTCTGCGCAATTCTTGTGTTTGCTTTTCTGCGAAAGGTTTCTGGCGATGGGGAAGATGAGGTCCTTACTGCATGGAAGAAGAAGATGAACGATCCCAACGAAGTTCTTAAGAACTGGGATCCTACCCTAGTGAGTCCTTGCACCTGGTTTGGTGTTAAATGCAATGGCGAAATTGTCACTCGTATTGATCTTGGAAATGCTCACCTTTCGGGTGAACTAGTTCCAGAGCTTGGTCAGCTCAGAAATTTGCAGCAATTGACACTTCATGGGAACAATATAAGTGGAAAAATCCCAGAAGAGCTAGGAAACTTGACAAGCTTGGTGTCCTTAGATCTTTACTCGAACAGACTAAGTGGTCCGATTCCAGACACATTAGGCAAACTTACGAACTTAAGTTTCCTTCGTCTCAATAATAACAGCTTATCAGGAAACATTCCTTTGTCTTTGACTGGTCTTAAATTACTGCAAGTCCTTGATCTCTCGAACAATCAGTTAAGTGGAGAAATACCAGTTGGCGGTTCATTTTCATCATTTTCTCCTACCAGTTTTTTAAATAATCCTGGACTCACAGCACCAAATGGATCTCCACTACCTCTGACGCCACCATCTCCTTCAGGTAACAGTAATAATACTGCTGCAATTGCAGGAGGAGTTGCTGCTGGTGCAGCACTGTTATCTGTAACCCTCGCTGTTGTACTTCTATATTGCAGAAGAAGGAAATCAAAAGTAGAACATTTCTTTGATGTTGCTGAGGATCCTCTTGATGAAATTGATCATCACCCTGGTGGTCAGCTTAAGCGGTTTTCTCTGCATGAGCTACTTGTAGCAACAGATAACTTTAGTAGCAGAAACATTCTGGGTGTAGGTGGCTTTGGTAGGGTTTATGAAGGACGCTTAGCTGATGGTTCTCGTGTAGCAGTAAAGAGACTGAAAGAGGAACGACCACATGACAGAGATAGGCAATTTCAAAGAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAACTTACTTCGCCTTCTTGGCTTTTGCTCTACACCCCCTGAACGCTTGCTTGTTTATCCTCTCATGGTTAATGGTAGTGTAGCATCATGCTTACGAGGGCGTCCAGAAGCACGACCTCCATTAGACTGGTTGACTCGGAAGCGTATAGCAGTAGGAGCAGCAAGGGGACTGGCTTATCTTCATGATCATTCACCAGAATATCTGTCCACTGGACAGTCTTCAGAGAAGACTGATGTTTTCGGATATGGCATCATGCTTCTTGAACTAATAACTGGACAGAAAGCTTTCGACCTAGCTCGACTTGCACTGGACCATGATCATATCATGTTGCTTGACTGGGTTAGAGAAGTGGTGAAAGAGAAGAGACTGGGAACTCTGGTGGATGCAGATTTAACGGGAATTTGTGATGAACAAGAAGTTGAAGAGGTGATCAAAGTGTGTTTACTGTGCACACAGAATAACCCTATGAGGAGGCCAAGAATGTCAGAAGTGGTGAGAATGCTGGAAATTAGTGAGGGTTTGCATGAAGAGTGGGAACAGTGGCAGAAATCAGAGATTTTGCAGAAACATGTTGATTCTAATATCAGACATCATCAGGCCAATGCTGAATTTACTGTAAACTCAACTTCATGCATAGTAGCAGAAGAACTTTCAGGTCCACGATGA 1686 0.4336 MVSFLLCAILVFAFLRKVSGDGEDEVLTAWKKKMNDPNEVLKNWDPTLVSPCTWFGVKCNGEIVTRIDLGNAHLSGELVPELGQLRNLQQLTLHGNNISGKIPEELGNLTSLVSLDLYSNRLSGPIPDTLGKLTNLSFLRLNNNSLSGNIPLSLTGLKLLQVLDLSNNQLSGEIPVGGSFSSFSPTSFLNNPGLTAPNGSPLPLTPPSPSGNSNNTAAIAGGVAAGAALLSVTLAVVLLYCRRRKSKVEHFFDVAEDPLDEIDHHPGGQLKRFSLHELLVATDNFSSRNILGVGGFGRVYEGRLADGSRVAVKRLKEERPHDRDRQFQREVEMISMAVHRNLLRLLGFCSTPPERLLVYPLMVNGSVASCLRGRPEARPPLDWLTRKRIAVGAARGLAYLHDHSPEYLSTGQSSEKTDVFGYGIMLLELITGQKAFDLARLALDHDHIMLLDWVREVVKEKRLGTLVDADLTGICDEQEVEEVIKVCLLCTQNNPMRRPRMSEVVRMLEISEGLHEEWEQWQKSEILQKHVDSNIRHHQANAEFTVNSTSCIVAEELSGPR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1301 561 FunFam Somatic embryogenesis receptor kinase 1 251 361 - -
Lele48g1301 561 ProSiteProfiles Protein kinase domain profile. 285 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g1301 561 SUPERFAMILY Protein kinase-like (PK-like) 268 518 IPR011009 -
Lele48g1301 561 SMART LRR_typ_2 85 108 IPR003591 -
Lele48g1301 561 SMART LRR_typ_2 157 182 IPR003591 -
Lele48g1301 561 SMART LRR_typ_2 109 133 IPR003591 -
Lele48g1301 561 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Lele48g1301 561 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Lele48g1301 561 Gene3D Ribonuclease Inhibitor 20 200 IPR032675 -
Lele48g1301 561 Gene3D Phosphorylase Kinase; domain 1 255 360 - -
Lele48g1301 561 FunFam Somatic embryogenesis receptor kinase 1 19 203 - -
Lele48g1301 561 MobiDBLite consensus disorder prediction 192 211 - -
Lele48g1301 561 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 519 - -
Lele48g1301 561 SUPERFAMILY L domain-like 23 186 - -
Lele48g1301 561 Pfam Protein tyrosine and serine/threonine kinase 404 508 IPR001245 GO:0004672|GO:0006468
Lele48g1301 561 Pfam Protein tyrosine and serine/threonine kinase 288 403 IPR001245 GO:0004672|GO:0006468
Lele48g1301 561 Gene3D Transferase(Phosphotransferase) domain 1 404 529 - -
Lele48g1301 561 Gene3D Transferase(Phosphotransferase) domain 1 362 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1301 Lele-ChrLele48 17260433 17263549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1301 1 561 Receptor kinase-like Gene Family AT4G33430 53.544 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele48g1301 PK_Tyr_Ser-Thr 1.9e-16 CL0016