Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1286 ATGGTATCCAAAAACCCAAACTCCCCTGAGGGCTTCTACTTGGATCCCCCTGGCATGGCGCTTCCCGGCCTTGTCCCCTTCGCCTCCGTCACTGCCGCCGCCACTACCACGACTGCCTCCACTGCTAATTCATCGGACGACCCTTCGAAGAAGATCCGGAAACCGTACACTATAACCAAGTCCAGGGAGAGCTGGAGCGAACCCGAGCACGACAAATTCCTCGAAGCCCTCCAACTTTTTGACCGTGATTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATACAGATACGTAGCCATGCACAGAAATATTTTCTAAAAGTTCAAAAGAGTGGAGCAAATGAACATCTACCTCCACCCAGGCCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCCAAAAATGCTCTGATACACTCTCAAATATCAGGATCCTTTCAATGTTCATCTCCTCTGGTTGAACCTGGATATATAATAAAGCCTGATTCCTCAGCAATGATCAAAACTCCAGTCACTAACGCTGTAGTTTCTTCTTGGTCAAAAAATACTTTGCAGACGACCAATTTGCTGCATGGGCCCAGATTGAATAATAGTTGCAGTAGCAGTGAAAGCACTCAGAGAGCACAGCCAATTGGTGTATCTACTGGTCAAGGGAATAATAGCCATCCATTGAGAGTTCTGCCAGACTTTGCCCAAGTTTACAAGTTCATTGGCAGTGTATTTGACCCAAAAGCCAGTGGGCATCTGCAGAAACTAAAAAAGATGGATCCTATCGATGTTGAGACGGTACTACTGTTGATGAGAAACCTGTCTATCAATTTAGCAAGCCCAGATTTTGAGGATCATGTAAGTATTCAGTTCACTGATTTGCTAGAAGGTTGCTCTCTTCTTATGAGGTGGAACCAGGGACACTCTAGCTATCTCAACGCGGAAAGACCCGGATGCAACAAGCAGTGGAATAGTGTTATGCTTCAATGGAGGATGGGGAAGAGCAACAAGCTGAGAGGTCTGTACAGTTCCAAAGCTCTACAGCTTTTTCTTGGACTACTACAGTATCGGTTCTGCCTGAGTTTTGACCGAACTTCAAATACCTTCCCTAATGAGAACATCTCCACTCAAGGCCAATTGCAGAGCACAGGTTTTCTATCTTCAGCTCTGCAGCCATGGAATGTTATTATACAGGAGAAGAATCACAAGGAGATCTGCAAATATCTCTTCAAAGAGGGAGTATGCTATGCGAAGAAGGATTATAATCTTGCAAAGCACCCAGAGATGGATGTGCCAAATCTACAGGTAATAAAGCTGATGCAGAGCTTCAAATCCAGGGAATATGTTCGGGAGACGTTTGCATGGATGCATTATTATTGGTTTCTAACAAACGATGGAATCGAGTATTTAAGGACATACCTTAATCTGCCCTCAGAAATTGTGCCTGCCACCTTGAAGAAAACTCCTAAACCAGTTGGCAGGCCATTCGGTGGTGGCCCACATGGGGATCGCCCACGTGGTCCTCCTCGGTTTGAAGGAGGTTCAAGGTCTGGGGACCGTGATGGATACCGTGGAGGGCCTAGAGGAGGACCTTCTGGTGAATCTGGTGGTGACAAAGGAGGAGCTCCGGCAGATTATCAGCCATCCTTTAGGGGTCCTGGTGCAAGGCCTGGCTTTGGACGAGGCGGTGGAGGTTTTGGCGCTGCACCTGGTACCAGCTTTTTATAG 1728 0.4647 MVSKNPNSPEGFYLDPPGMALPGLVPFASVTAAATTTTASTANSSDDPSKKIRKPYTITKSRESWSEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKNALIHSQISGSFQCSSPLVEPGYIIKPDSSAMIKTPVTNAVVSSWSKNTLQTTNLLHGPRLNNSCSSSESTQRAQPIGVSTGQGNNSHPLRVLPDFAQVYKFIGSVFDPKASGHLQKLKKMDPIDVETVLLLMRNLSINLASPDFEDHVSIQFTDLLEGCSLLMRWNQGHSSYLNAERPGCNKQWNSVMLQWRMGKSNKLRGLYSSKALQLFLGLLQYRFCLSFDRTSNTFPNENISTQGQLQSTGFLSSALQPWNVIIQEKNHKEICKYLFKEGVCYAKKDYNLAKHPEMDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEYLRTYLNLPSEIVPATLKKTPKPVGRPFGGGPHGDRPRGPPRFEGGSRSGDRDGYRGGPRGGPSGESGGDKGGAPADYQPSFRGPGARPGFGRGGGGFGAAPGTSFL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1286 575 FunFam 40S ribosomal protein S10 395 498 - -
Lele48g1286 575 CDD SANT 64 107 IPR001005 -
Lele48g1286 575 FunFam protein REVEILLE 6 isoform X1 64 112 - -
Lele48g1286 575 MobiDBLite consensus disorder prediction 505 523 - -
Lele48g1286 575 Gene3D - 65 112 - -
Lele48g1286 575 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Lele48g1286 575 PANTHER 40S RIBOSOMAL PROTEIN S10 396 570 IPR037447 -
Lele48g1286 575 SMART sant 61 109 IPR001005 -
Lele48g1286 575 MobiDBLite consensus disorder prediction 196 223 - -
Lele48g1286 575 MobiDBLite consensus disorder prediction 485 575 - -
Lele48g1286 575 ProSiteProfiles SANT domain profile. 60 111 IPR017884 -
Lele48g1286 575 MobiDBLite consensus disorder prediction 112 137 - -
Lele48g1286 575 Gene3D - 395 498 IPR036388 -
Lele48g1286 575 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Lele48g1286 575 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Lele48g1286 575 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Lele48g1286 575 Pfam Plectin/S10 domain 397 488 IPR005326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1286 Lele-ChrLele48 17188655 17195393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1286 395 551 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 78.616 1.97e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele48g1286 S10_plectin 1.7e-41 CL0123