Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1278 ATGTCATCGCCGGGTGGTGGAGCATCGGAGTTCTACGGCGGAGTTGGCCGATCCATGGCGGCAACCGCCATGAACGACCCTGCCAACGCTAACAACCTTCAACCTTCTATTCATCCTCTGTACCGAAACCAGCAGCAACAACAACACCGAGCAATTCTTCTAGATCGTTATACGCAGATCGCAAGGCAAAATCCGAGTCTCATCGGGAAGCGAACCCTCGCAGAATTTCAAACTCATCAACAGAACCACAACAATCAGGTCCTTTCAAGCCTCCTTCTACGCTCTGTGAAGCCCAGAAACTTCCAGAATAGCTCTCCTATGTCTCCTATGTCACCCATGGATTTCTCCATGTCCCCTGAATTGACAAACCATTCGGTTTTCTCGTCGCAGCGCTATGGGGTGCCTTTGCTTCAACAATCTCGCCCACAGACGATGAATCTCCCAAACGCGGCCTTATCCAGGGCTGGGTTTCCATATTTGAATGGTAATTTGGTTCAGGAAAGTGAGAAGAAGGTCATGGACCATCGGCTTCAGGAGTTGGAGAAACAGCTTTTGGAAGACAACGACGAGGAAGAAGGCGATGCGGTATCTGTGATCACCGGCAGCGAGTGGTCAATAGAGAACCTTATCAGTCCCGGCGTTCAGAAGCCAATTTCGTCGTCGCCTACTTCGTCTACAACCTCGACGACGTCGTCATCTTCCTCTGTAGCTTCCCCTGCTTCCACCTGTTTGAAGCAGTCGTTAATGGAGGCCGCATCTGCAATTTCCGAAGGGAAATCCGACTCCGCCACGGAGATCCTGACCCGTTTGGGACCGTTATCAAACCCGAACGGCAATTCAGATAAGCGATTGATGAGTTGTATGATTTCTGCACTGAAATCCCGTGTGAACCCACACGAAAACCCACCTCCGGTTGTAGAACTCTTCAGCAGCGACCACGCCGAGTCGACTCAGTTGCTCTACGAACATTCTCCGTGCTTCAAGGTTGGGTTTATGGCGGCCAATCTGGCAATCCTCGAAGCCGCATTCGAGGACAACACAGAGGACAACGGCAGCAACAAGTTACACGTGGTCGATTTCGACATCGGCAGGGGTAAGCAATACATAAATCTCCTCCACGAGCTCTCGATGCGTCAGAATGGAAAATTAGTCACGGTGTACATCACGGCGGTTGAGGAGAACGGCAGTGAAGAGAGGTTGAAGATGGTGGGTGCTATGTTAAGACAACAAGCGGAGCAACTCGGAGTCAGGTTCGAGTTCAGAGCAATAACCCAAAAACTCACCGAGTTAACGCGTGAGTCACTAGGGTGCGAGGCCGACGAACAACTCGCAGTGAATTTCGCTTTCAAATTGTATAGAATGCCTGACGAAAGCGTTTCCACAGAGAACCCCCGAGACGAGCTTCTCCGGCGCGTGAAGGGGTTGGCCCCGCGCGTGATGACGCTTGTGGAGCAAGAGATAAACACGAATACGGCGCCGTTTACATCCCGCGTTTCCGAGTCGTGCTCATATTACGGCGCGCTATTTGATTCGCTCGAGTCAACAATCTCAAGAGACAACTCAGAGCGAGTGAAGTTGGAACAGGGACTGAGCCGAAAGCTGATGAACTCGATCGCGTGCGAAGGAAGAGATCGCGTGGAAAGGTGTGAGGTGTTTGGGAAGTGGAAGGCGCGTACGACCATGGCGGGGTTTCAACTGAAGGGAATGAATCAGAGAATCGCCGAGTTGATGAAAGCTCGACTCAACCAGGGGAGCCGAGTCAACCCGGGATTCACAGTGAAAGAGGAGAATGGTGGGATTTGCTTTGGTTGGAGGGGTCGAACACTCACCGTCGCATCTGCTTGGCGTTAA 1851 0.5186 MSSPGGGASEFYGGVGRSMAATAMNDPANANNLQPSIHPLYRNQQQQQHRAILLDRYTQIARQNPSLIGKRTLAEFQTHQQNHNNQVLSSLLLRSVKPRNFQNSSPMSPMSPMDFSMSPELTNHSVFSSQRYGVPLLQQSRPQTMNLPNAALSRAGFPYLNGNLVQESEKKVMDHRLQELEKQLLEDNDEEEGDAVSVITGSEWSIENLISPGVQKPISSSPTSSTTSTTSSSSSVASPASTCLKQSLMEAASAISEGKSDSATEILTRLGPLSNPNGNSDKRLMSCMISALKSRVNPHENPPPVVELFSSDHAESTQLLYEHSPCFKVGFMAANLAILEAAFEDNTEDNGSNKLHVVDFDIGRGKQYINLLHELSMRQNGKLVTVYITAVEENGSEERLKMVGAMLRQQAEQLGVRFEFRAITQKLTELTRESLGCEADEQLAVNFAFKLYRMPDESVSTENPRDELLRRVKGLAPRVMTLVEQEINTNTAPFTSRVSESCSYYGALFDSLESTISRDNSERVKLEQGLSRKLMNSIACEGRDRVERCEVFGKWKARTTMAGFQLKGMNQRIAELMKARLNQGSRVNPGFTVKEENGGICFGWRGRTLTVASAWR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1278 616 Coils Coil 170 190 - -
Lele48g1278 616 ProSiteProfiles GRAS family profile. 235 616 IPR005202 -
Lele48g1278 616 MobiDBLite consensus disorder prediction 212 239 - -
Lele48g1278 616 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 213 609 IPR005202 -
Lele48g1278 616 Pfam GRAS domain family 244 616 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1278 Lele-ChrLele48 17128845 17130695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1278 41 616 GRAS Transcription Factor Family AT5G52510 50.322 2.74e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele48g1278 GRAS 2.9e-103 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1278 48 17128845 17130695 Lele48g1278 48 17128845 17130695 ECH
Lele45g0163 45 1341540 1343390 Lele48g1278 48 17128845 17130695 hybridization
Lele46g0181 46 1084128 1085993 Lele48g1278 48 17128845 17130695 hybridization