Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1275 ATGGCTTCGGACCGCTTGAAGCTGAAGATCTTCGAGAAAAGCCATGTGAAGCCCAAGAAAAAACTGGGGAGGAAGGAGTCTCAGCTCGTGACCTTCGATCTTCCATACTTGGCCTTCTTCTACAACCAGAAGCTTCTGTTCTACAAAGGTGGCGACTTTGAGGGGAGGGTGAAGAAGCTGAAAGAAGGCCTAAGTGTTGTTCTTGGCGAGTTTCCTCAGCTCGCAGGGAAGCTTGGGAAGGACGAAGAAGGGGTTTTCAGAGTTGAGTATAACGACGAAGAAGACGATGCAAAAGACGGCGGAGGTGTTGCTGGAGTTGAGGTCGTTGAAGCTGTGGCTGAAGCTGATGTTTCAGTGGCGGATCTAACTGTTGCAGAAAGCACAAACACTTTGAAGGAACTTATTCCTTACACTGGGATTCTCAATTTGGAAGGCATGCATAGGCCGTTGTTGGCGATTCAGTTAACGAAGCTGAAAGACGGATTAGCGATGGGATGCGCCTTCAACCATGCGGTTCTTGATGGAACGTCCACGTGGCACTTCATGAGCTCGTGGGCTGCGATCTGCGGCGGCGCACCTTCAGTTTCAGCATCTCCGTTCCTAGAAAGAACCAAGGTGCGAAACACGCGCGTGAAGCTCGACCTCTCACTCCCATCGGCGGACCCACTTGCGGCAAAATCCAACGGTGATGTTAAGCAGGCCCCATCACCACCTGTTCTCAGAGAGAGGATCTTCAAGTTCTCCGAGTCAGCCATCGATACGATCAAGTCAACGGTCAACGAAAAGCTCCCATCGGACGGATCAAAACCATTCTCCACATTCCAAGCCCTATCGGTACATATCTGGCGCCACGTGACTCATGCACGTAACCTTAAACCGGAAGACTACACTGTCTTCACCGTCTTTATCGACTGCCGGAAACGGGTCGACCCACCAATGCCGGAGACTTACTTCGGAAACCTAATCCAGGCAATATTCACCGTTGCCACGGCAGGTTTGTTGTCGGCAAACCCACCGGAGTTCGGCGCGTCTTTGATTCAGAAGGCAATTGAAGCCCACACTGCGAAGGCCATAGATGAGAGGAACAACGAGTGGGAGAGCGCACCGAAGATTTTCCAGTTCAAAGACGCCGGCGTGAACTGCGTGGCTGTCGGAAGCTCGCCGCGGTTCAAGGTTTACGACGTGGATTTCGGGTGGGGCTCACCGGAGAATGTGAGGAGTGGATCAAACAACAAGTTCGATGGGATGATTTATCTGTATCCAGGTAAGAGTGGGGGGAGGAGCATCGACGTGGAGCTGACCTTGGAGAGTGAAGCCATGGCGAGGTTGGAGGAAGACAAGGAGTTTCTTATGGAGGTTTAA 1362 0.5198 MASDRLKLKIFEKSHVKPKKKLGRKESQLVTFDLPYLAFFYNQKLLFYKGGDFEGRVKKLKEGLSVVLGEFPQLAGKLGKDEEGVFRVEYNDEEDDAKDGGGVAGVEVVEAVAEADVSVADLTVAESTNTLKELIPYTGILNLEGMHRPLLAIQLTKLKDGLAMGCAFNHAVLDGTSTWHFMSSWAAICGGAPSVSASPFLERTKVRNTRVKLDLSLPSADPLAAKSNGDVKQAPSPPVLRERIFKFSESAIDTIKSTVNEKLPSDGSKPFSTFQALSVHIWRHVTHARNLKPEDYTVFTVFIDCRKRVDPPMPETYFGNLIQAIFTVATAGLLSANPPEFGASLIQKAIEAHTAKAIDERNNEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDVDFGWGSPENVRSGSNNKFDGMIYLYPGKSGGRSIDVELTLESEAMARLEEDKEFLMEV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1275 453 Coils Coil 440 453 - -
Lele48g1275 453 Pfam Transferase family 7 449 - -
Lele48g1275 453 Gene3D - 2 215 IPR023213 -
Lele48g1275 453 Gene3D - 221 445 IPR023213 -
Lele48g1275 453 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 450 - -
Lele48g1275 453 FunFam Tryptamine hydroxycinnamoyl transferase 225 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1275 Lele-ChrLele48 17099532 17102068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1275 6 453 Monolignol Biosynthesis Gene Families AT5G48930 25.745 1.18e-34 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1275 48 17099532 17102068 Lele48g1275 48 17099532 17102068 ECH
Lele45g0167 45 1386412 1389051 Lele48g1275 48 17099532 17102068 hybridization
Lele46g0185 46 1128032 1130586 Lele48g1275 48 17099532 17102068 hybridization