LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g1272	ATGCCTTCATGGTGGGGGAAATCATCGTCAAAAGAAACCAAGAAGAAAGGAAGTAAAGAAAGTTTCATTGATACAATACAAAGAAAACTTAAAATCCCATCTGAAGGTAAGGTAAGCAGTAGGTCTGGAGGACCTCGGAGAAACTGCAATGACACAATTTCAGAGAAGGGGGCTCAGTCTCCAGTTGAATCAAGGTCTCCTTCACCATCCAAAGTAGCACGGTGTCAAAGTTTTGCTGAAAGGCCTCATGCTCAGCCACTACCACTTCCTGGAAGGCATCCTTCATGTATAGGACGAACAGATTCTGAAATTTGCATATCATCAAAGTCAAGAGGGGAGAAGGGTTCCAAGATATCATTGTATCTGCCACTCCCAAGACCTGCATGCATACGTAATAGGTCAAACCCTGCAGATTTAGATGGAGACCCTATCACTGCCTCTGTATGTAGTGAAAGCTCTGCTGATAGTGATGAGCCAGCTGATTCATGCCAACGCAGTCCACTGGCAACTGACTCAGAGACTGGGACTAGAACTGCTGCTGGCAGCCCTTCCAGCTCAATGCTCAAGGATCAATCATCTACTGTTTTGCAACTAAATTCAAGAGAGGTCAAAAAGCCAGCAAACATTCTGAGCAATCATGTATCTCCTACATCCCCAAAACGGAGACCTTTAAGCAATCACGTGCCAAATCTGCAGGTTCCTCCTCATGGGGCTCTCTTTAGTGCTCCTGACAGCTCCAAGTCAAGTCCATCAAGAAGCCCATTGAGAGCATTTGGCACAGAACAAGTGCTGAGCTCTGCTTTTTGGGCTGGAAAGCAATATTCGGAGGTCAATTTTATTGGATCTGGGCACTGCTCCAGTCCAGGTTCTGGTCAGAATTCTGGGCATAATTCAATGGGAGGGGACATGACAGGACAGATATTTTGGCAACCAAGTAGGGGTAGCCCTGAGTATTCTCCTGTTGTTAGCCCCAGAATGACTAGTCCTGGTCCAAGCTCTAGGATTCAAAGTGGAGCCGTCACACCCATTCATCCTAGAGCCGGGCCAACACCCTCTGAATCACAGACTGGATGGGTTGATGATGGAAAACAACAGAGTCATCGTCTGCCTCTCCCTCCCCTAACAGTTACGAATTCCTCACCTTTCTCACATTCAAATTCAGCAGCTACATCTCCATCTATGCCAAGAAGTCCAGGAAGAGCAGATAATCCTTTGAGCCCTGGCTCTCGATGGAAAAAGGGAAAGCTGCTGGGAAGAGGCACTTTTGGACATGTCTATGTTGGCTTCAATAGTGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACATTGTTTTCAGATGATGCCAAGTCCAAGGAAAGTGCTAAGCAATTAACGCAGGAAATTGCTCTCTTAAGTCGTTTACGGCATCCCAATATTGTGCAGTATTATGGTTCTGAAACTGTAGATGACAAGCTTTACATATACCTGGAGTATGTATCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGGCAATTTGGTGAACAAGCTATCCGCAACTATACCCAACAAATTTTGTCAGGGCTGGCTTATTTACATGCTAAAAATACTGTCCACAGGGACATCAAGGGAGCAAATATACTTGTAGATCAAAATGGCCGGGTAATCAAGTTGGCAGACTTTGGCATGGCAAAACATATAACAGGGCAGTCATGCCCATTATCGTTTAAGGGAAGTCCTTATTGGATGGCTCCTGAGGTCATAAAGAACTCTAGTGGTGCCAACCTTGCTGTGGATATATGGAGTCTTGGTTGCACAGTTTTGGAAATGGCTACAACTAAGCCTCCTTGGAGTCAGTATGAAGGGGTCGCTGCCATGTTTAAGATTGGTAATAGCAAGGAACTCCCAACAATGCCAGATCACCTCTCAAATGAAGGAAAGGATTTTGTTCGGAAATGTCTACAACGTAACCCACATGATCGTCCTTCGGCCCAGCAACTATTGGAACACCCTTTTGTAAAATGTGCTGCACCTTTGGAAAGACCTATTCTGGGTGCTGAAGCGTTAGATCAGGTCTCTGGTATTGCCCATGGAGCAACATCTCTGGGCACCGGACAAGGCAAAAACCTCTCTGCCCTGGATAATGACAGACTTTCTGTTCATTCTTCTAGGGTGTTGAAAACTAATCTGCATGCCAGTAATGAAATCCATATTCCAAGGAATATTTCTTGCCCTGTCTCTCCCATTGGAAGCCCACTTTTGCGGTCGAGATCACCACAGCACATGAATGGGAGAATGTCTCCCTCTCCTATATCTAGCCCCCGTACAGTTTCTGGTGCATCCACGCCTCTCACTGGTGGTAGTGGTGCCATTCCATTTGGCAATCATCTGAAACAGTCCGCTTACTATCAAGAGGGTCTTGCAAACTTGCCAAAGCACTCAAATGTTATCTACATTAGTGCCCCTGCTCATCATGACTCCGGCGTTGACATCTTTCGCAATCTGCAAATGGGGTCTCAAACAGAATTGATTCCGAGTGAAAATGATGTTCTGGGGAAGCATTATGCGAGGCCTCCTGTTGAGCCTTATGATGTTCAGTCAATCTTGGCTGATCGTGTTTCCCGACAGCTACTGGGAGATCATGTTAAGATTAACCCATCTCTGGATCTTAGTCCCAACTCTCCTTTGCTCAACCGGGCAAATGTCCATTTTGTTTGGCTTCAAGCTCAGGCATGGGGGAGTTCAGATCTTTACTTGTTTAGCAAACTAAACCACGTTATGAAACTTTCTGACATGATTCGTCTATATCAGCTTACACATAGTCGGTCTGGTAAAGAAGCTTGTTTTAGGATGCACCATCAACTCATTTGA	2856	0.4534	MPSWWGKSSSKETKKKGSKESFIDTIQRKLKIPSEGKVSSRSGGPRRNCNDTISEKGAQSPVESRSPSPSKVARCQSFAERPHAQPLPLPGRHPSCIGRTDSEICISSKSRGEKGSKISLYLPLPRPACIRNRSNPADLDGDPITASVCSESSADSDEPADSCQRSPLATDSETGTRTAAGSPSSSMLKDQSSTVLQLNSREVKKPANILSNHVSPTSPKRRPLSNHVPNLQVPPHGALFSAPDSSKSSPSRSPLRAFGTEQVLSSAFWAGKQYSEVNFIGSGHCSSPGSGQNSGHNSMGGDMTGQIFWQPSRGSPEYSPVVSPRMTSPGPSSRIQSGAVTPIHPRAGPTPSESQTGWVDDGKQQSHRLPLPPLTVTNSSPFSHSNSAATSPSMPRSPGRADNPLSPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLTQEIALLSRLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGQFGEQAIRNYTQQILSGLAYLHAKNTVHRDIKGANILVDQNGRVIKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSSGANLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTMPDHLSNEGKDFVRKCLQRNPHDRPSAQQLLEHPFVKCAAPLERPILGAEALDQVSGIAHGATSLGTGQGKNLSALDNDRLSVHSSRVLKTNLHASNEIHIPRNISCPVSPIGSPLLRSRSPQHMNGRMSPSPISSPRTVSGASTPLTGGSGAIPFGNHLKQSAYYQEGLANLPKHSNVIYISAPAHHDSGVDIFRNLQMGSQTELIPSENDVLGKHYARPPVEPYDVQSILADRVSRQLLGDHVKINPSLDLSPNSPLLNRANVHFVWLQAQAWGSSDLYLFSKLNHVMKLSDMIRLYQLTHSRSGKEACFRMHHQLI	951

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	286	413	-	-
	Lele48g1272	951	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	60	678	-	-
	Lele48g1272	951	SUPERFAMILY	Protein kinase-like (PK-like)	409	774	IPR011009	-
	Lele48g1272	951	Pfam	Protein kinase domain	412	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	1	98	-	-
	Lele48g1272	951	ProSitePatterns	Protein kinases ATP-binding region signature.	417	440	IPR017441	GO:0005524
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	9	35	-	-
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	146	225	-	-
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	132	255	-	-
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	286	339	-	-
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	348	362	-	-
	Lele48g1272	951	Gene3D	Transferase(Phosphotransferase) domain 1	409	687	-	-
	Lele48g1272	951	ProSiteProfiles	Protein kinase domain profile.	411	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	370	397	-	-
	Lele48g1272	951	SMART	serkin_6	411	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	41	73	-	-
	Lele48g1272	951	FunFam	Mitogen-activated protein kinase kinase kinase	409	693	-	-
	Lele48g1272	951	MobiDBLite	consensus disorder prediction	754	776	-	-
	Lele48g1272	951	CDD	STKc_MEKK1_plant	410	668	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g1272	Lele-ChrLele48	17075628	17080568	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g1272	1	887	MAP Kinase Kinase Kinase	AT1G63700	57.901	0.0	869

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Lele48g1272		Pkinase	4.8e-74	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele48g1272	48	17075628	17080568	Lele48g1272	48	17075628	17080568	ECH
	Lele45g0172	45	1408338	1413522	Lele48g1272	48	17075628	17080568	hybridization
	Lele46g0189	46	1148127	1152778	Lele48g1272	48	17075628	17080568	hybridization