Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1270 ATGCCTGTTGAAAAACACAAGGGTTTTGGTACCACAGATGTCATGAAAGCAGAGGATGGAAATGACTCCATAGATACCATAATCAGAAAGGCAATTGTCAGAGAACCTTTTCTTTCTTTTCCAAGGGATAGTGACAGTCCAGTCCAGTGGATAAAACTACTTCACGCGTTAGATCAGCAAGAACTGCCAGGCTGGCCTTTGCTCTCTCATCTGAAGGTTCAATTGCAGAAGTGTGAAAAGTGTTCCCGAGAATTCTACTCTTCAATTAATTACAGAAGACATATACGTGTTCACCATCGGTTGAAAAATATTGATCAGGATTCCACAAAAAATAGAGATCTGTTAGGAGCATATTGGGATAAGGAAGTTCCAGGGTCTTCTATTTTAAAATCGCTGACTACTCTGGTTTGGAAACAAGGATTTTCTTCACTTCCACAGAATTATCTGAAGTCTGGTTCTGCCCTTTTGGTAAAGGCATGGCTTGCTGACAAGGAAGCTGAAGCATTAAGATGCCAGAAACTGCTAGTGGAGGAGGAAGAAGCTGCTCAGAAAAGGCAAGCTGAGGTTTTGGAGAGGAAACGTAAGAAAAAACTTAGGCAAAAAGAACAAAGGGCAAGGGGGCAGAAGCTTGAGGATGAGCCAGAAATGAAAAAGAATGGCAGCAGTAGAGCAGCTGACAGTTCATTAGTAGAAGTATTTTCAGATATATGTGATTTTGGAGAACATAGTCCAGATACATTATCAAGCCATGGTCATTCACTACATGTGCCCTTCCATTGCAATGACACTAATGAAGGTGTGGATGGGGTTTCTGTGTCAATGTATGGTTGTCGAACTGATATGCACATTGAGCAAGAGACATCCCAAGGACACGTTTCTCAACAAGTGGTTTCTCAATCAAAATCACAATGTGCTTTAGCTAATGGTTTTCAAGCAAATCATAACTCTCAAATTTCCAAGCTTGGAGTTATTCAAAAGTATGTGAGCGACTGCGATCAAAAGGCTGCTCCCATGTTTAATGGTAACAAAGTATGGAGCCGAAAGCCTGAGCAAAAAATTATTGGGGTACATTCAAAAGCCAGACTAGAGAAAGAACCAGATGAGGGTAAAAACCATGAAGTTTTAATAGGGTCTATATCTGTTACTCTTGGAAATTACAGCCAATCAGAGGAGACTCTATTGGCATCTGGAAAGGACTCCGTGGTTGGCAATTTGACCAAGCATAGTAATGCTCAAGAGAAGCCAGTTAAACCTGATTCTATACAGATCGGTAACAAACGGTTAATAGTTAAGTTTGTTAAGCTTTGGAAGCCAATTACTCATCATGGAACTAAATATTCATTACCACTTCACCGTGCTAGCCCAGAAGCTAATGCAATAGATGAAAAAAACGATGATCAAAATTTGTCGGACCAAAATTCTTTAAGGCTGTGTGATTTATATAGTAGTGATAGCAGTTATGGAAATAATTCCTCCCATCTAGAGGGCCAAGTGGGTTCAGGAAACTTGCAGTTTTCCAGCGAAGCTGCTAAAGCTTTTCTTGTAGAAAGATGGAAAAAAGCTATCTCGTCAAACCATGTGAAATTGGTTTTTTCACTTGATTTTGAACCTCCTAGGTGCATGGAGGCACAAGACTGTGAACCAGCTATATGTCAATCTTCGAATATTGACAAATGCTGTATTTATGCAATTGCAGAGACTCAATTGCCTGCAACCTCATCTAAATCCAAAATTAGAATTGTAAAGGTCAAAAAATTAAAGGTAAGTTTTGATGGGAAGTCTTTTTACATTCCACCCTTTCCACTTCAGAAGATAGCAATATGGTGGTATAGGAGATTGTGCACTCATTCTCTCCTTGAGAAAACCCTAGTTCCCTCAATAACCCTTGATCGTAGTATCAATTTTCTCGGCATCTTCGGGAAAAAAATGTCAGGTGGGGTTGGTCCAATTGGGTCCGATATCACCGTCCCAAAAGGGCAAGAAGTTATACACAAAGAACAACAAGACCCTAATCAGAATTCCCTCAAACTCAAAACCCCCAAGATCATCAACCCAACTTTCCTCTCTTTCCCTCAACTCAATTCCCTAGCAGTCATAGTAATCTTAGCCTCAAGTGGAATGGTAAGCCTTGAGGATTTTTCCTTCGTCATCTTCTCCTTCATGTACCTCTTCTTCTTCTCCAAAATAGCCTTCCCTTTAAAACCCAACTGCACTTACCCTCCAGTCTTCGACCCTAAGAACAAGCTTCTTCGTCTTTATGTCAACATAGGGGCAATTGTAGGACTCTATGCCCCAATAGCCTACATATTGCAGGGCACTTGTGAGGGTGACAAGGAAGGAATAAAGGCAGCTTCACCTCATTTGTTTCTTCTGGCAAGTCAGATTTTCATGGAAGGGATAGTTTTCACAGGGAAATTCTCACCTCCAAGTAGGGCTTTTGTGCCTGTATTCTATAACTCAAGGAGGATATTCACCATTGTGGATTGGCTCAGGACTGAGATCTACAAAGTTGAAGCACAGCACAGTGGGTCCGATATGAGAGTGATGGCGGGTAGGGTTCTTGCTGTGGCGAATATGGCGTTCTGGTGTTATAATCTGTTTGGGTTTCTATTGCCTGTTTATCTTCCTAAAGTCTTCAAGGTGTATTACTCTGGGAACAAAGAAAAAGAGTGA 2673 0.4097 MPVEKHKGFGTTDVMKAEDGNDSIDTIIRKAIVREPFLSFPRDSDSPVQWIKLLHALDQQELPGWPLLSHLKVQLQKCEKCSREFYSSINYRRHIRVHHRLKNIDQDSTKNRDLLGAYWDKEVPGSSILKSLTTLVWKQGFSSLPQNYLKSGSALLVKAWLADKEAEALRCQKLLVEEEEAAQKRQAEVLERKRKKKLRQKEQRARGQKLEDEPEMKKNGSSRAADSSLVEVFSDICDFGEHSPDTLSSHGHSLHVPFHCNDTNEGVDGVSVSMYGCRTDMHIEQETSQGHVSQQVVSQSKSQCALANGFQANHNSQISKLGVIQKYVSDCDQKAAPMFNGNKVWSRKPEQKIIGVHSKARLEKEPDEGKNHEVLIGSISVTLGNYSQSEETLLASGKDSVVGNLTKHSNAQEKPVKPDSIQIGNKRLIVKFVKLWKPITHHGTKYSLPLHRASPEANAIDEKNDDQNLSDQNSLRLCDLYSSDSSYGNNSSHLEGQVGSGNLQFSSEAAKAFLVERWKKAISSNHVKLVFSLDFEPPRCMEAQDCEPAICQSSNIDKCCIYAIAETQLPATSSKSKIRIVKVKKLKVSFDGKSFYIPPFPLQKIAIWWYRRLCTHSLLEKTLVPSITLDRSINFLGIFGKKMSGGVGPIGSDITVPKGQEVIHKEQQDPNQNSLKLKTPKIINPTFLSFPQLNSLAVIVILASSGMVSLEDFSFVIFSFMYLFFFSKIAFPLKPNCTYPPVFDPKNKLLRLYVNIGAIVGLYAPIAYILQGTCEGDKEGIKAASPHLFLLASQIFMEGIVFTGKFSPPSRAFVPVFYNSRRIFTIVDWLRTEIYKVEAQHSGSDMRVMAGRVLAVANMAFWCYNLFGFLLPVYLPKVFKVYYSGNKEKE 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1270 890 MobiDBLite consensus disorder prediction 189 225 - -
Lele48g1270 890 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 156 587 - -
Lele48g1270 890 MobiDBLite consensus disorder prediction 204 220 - -
Lele48g1270 890 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Lele48g1270 890 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1270 Lele-ChrLele48 17063956 17070825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1270 156 532 C2H2 Transcription Factor Family AT4G25610 34.375 4.35e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele48g1270 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1270 48 17063956 17070825 Lele48g1270 48 17063956 17070825 ECH
Lele45g0175 45 1418953 1419693 Lele48g1270 48 17063956 17070825 hybridization
Lele46g0191 46 1157985 1158716 Lele48g1270 48 17063956 17070825 hybridization