Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1266 ATGTCAGATTCCGAGGACGAAAATCCCGAACTTACTCCCCAATCAAAGCCCACTGCCGACGAACCTGGCTCTGTAATGGATTTCGACGTCGACCTAGAGAGTTCCTGGCCTTTAGATCAGATAGCTTTCGCTTCTAACCCTATGTCCCCTTTTCTGATTTCCGCCACATCGGAGCAACCTTCTTCTCCTCTCTGGCTTTTCTCAGACGTTGACGATGATAGGCAAGCTAAACTTGCCGCTTCGGCCCTCTCCGATGTCCATCGATTTCTCTCATGCAATTCGAATTCAGTAGCTGAAAAACCTGTGGAGAATGAGGAGACAAAAAAAGCCCCTTCGTCCTTTGTTGCCCTGCCACCATTACCATTAGAAACTCCAGATGGGTATTGTTTGATTAAAGAAAGGATGACACAAGCACTAAGGTACTTCAAAGATTTGGCTGACCAGAATGTTCTGGCTCAGGTTTGGGCACCTGTAAGGATGGGAAACCAGTATGTCCTTACAACTTCAGGGCAACCCTTCGTTCTTGATCCTCATAGTAATGGACTCTATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCAGTGAATGGGGAGAATGATGGAATCCTGGGGCTTCCCGGTCGTGTTTTTCAACATAAGTTGCCAGAATGGTCTCCCAATGTTCAATATTATTCTAATAAAGAGTATCCCCGCCGAAATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAGAGAAGTCATGTATTGGTGTGCTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCCCCTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAAGAGTTCAGAAATTTTGGAACATCCGTTCACTCAGATTTGTAATGAAAGCCGTCAGAATGCATTAGCAGAGATATTGGAGATATTGACAGTGGTCTGTGAAACTCATAAATTACCTCTGGCCCAAACATGGGTTCCCTGTAGGCATCGGAGTGTTCTGGCCAATGGTGGTGGCCTGAAGAAGTGCTGCTCCAGCTTCGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACTACTGATGTTGCATTCTATGTCATAGATGCTCATATGTGGGGTTTCCATGAAGCCTGTGCTGAGCATCACCTACAACAAGGTCAAGGGGTTGCTGGGAAGGCATTTTTGTCCGGCAATATGTGCTTCTGTGGGAACATTACCCAATTCTGCAAAACTGAGTATCCTTTGGTACATTATGCTCTCATGTTTGGCTTAACCAGCTGTTTTGCTGTTTGTTTGCAAAGCTCTCATACAGGACTTGATGATTATATACTGGAGTTTTTTCTGCCTCCTAAGGTCACAGACTTAAACGAACAAAAGACTATGTTAGGATCTATATTAGCAACAATGAAACAGCATTTCCATAGTCTTAAGATAGCTGCTGGTGTTGAACTCGAGGAGGAATGTTCAGTTGAAATCATTGATGCAACAAGTGAAAGAGTTTATTCAAGACTCAAATCTATTATGATTACCCAACCTACTAAATTGCCACAAGGATCTGATCCCTTGCCAAATATGGGGGAGATTTTAGCACTGGAAACATCAGAGCAGCAAATGGTATTCTTAGACGATATAAATGGTGGGAGTCTCGATGATAGAGCTGGAGAAACCTCTGATCAGATATACCCCTTGGAGACTAAAAACATAAAGAAACCCTCGGAAAGAAAACGGGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTTTGCAAAACTATTTTGCTGGTAGTCTTAAAGATGCTGCAAAGAGTCTTGGGGTTTGCCCCACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGGAAGATTAACAAGGTTAATCGTTCCCTGTCCAAGCTCAAGCGGGTCATTGAATCCGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGTACCAGTACATTTCCCATGGCTGTTGGTTCCTTTCCTGAGACTTCAAACAGGTTCAACCAACAAGCCTCGCTAAGCACTCAACTGGCAGAACCACAGATGAAAGAGAACGAGTTGGATGCCTCCAAAGTATCAGATTCAAACAGGCAAACTAAGGTGGAACATCAGTTGGTAGGAGGAAGGGTACAAAGTCCTGAGAAAAGTGGGTCCAGTCATGAGTTTGGTAAATGCCCTAAAGGACCTAGAACGGGGAGTGCCTCGAGCGAAGATAGGGCAAACCCTACTTCTCATGGTTCGTGTCATGGTAGTCCCCCAACCGAAAGTTCACCTCCAAAAGATATATTCATTACAACCAATACTGATCAGTATGTTGTGGCTGGGGGTTCGCCGGAGTTGCCGCCAACAAGTAAACTGAACAGTCCGCCTGGGTATGCCATGCCCAACCTTGTGCCCACAGAACTTCAGGAGTCATTTGGGGGAATGCTGATAGAGGATGCAGGTAGTTCCAAAGACTTGAGAAATTTGTGTCCTGCAGTAGCAGATGCCAATGTGGAGGATCAGTTACCAGAAGCTTGTGCTGCTAATCCTCCTCTCTCAGACTTGGGTCCTAAGCAATGCACCAATACTCTTGGTGACACGATGATGCCTTTCGCAGCTCGGAGAGAAATGAAGACCGTGACTATAAAAGCAACATACAGAGAAGATATCATACGGTTTCGAATCTCCTTAACCTCGGGCATGGTGGAGCTGAAAGAAGAAGTGGCAAAAAGACTGAAACTAGAGGTGGGTACTTTTGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATAGTCTGTGATGCAGACCTTCAGGAGTGCATGGATATCTCTAGAGCATCCGGTACTAACATAATCAGGCTCTTGGTGCATGATATAACGTCCAATCTCGGAAGTTCCTGTGAGAGCTCAGGAGAGTGA 2952 0.4468 MSDSEDENPELTPQSKPTADEPGSVMDFDVDLESSWPLDQIAFASNPMSPFLISATSEQPSSPLWLFSDVDDDRQAKLAASALSDVHRFLSCNSNSVAEKPVENEETKKAPSSFVALPPLPLETPDGYCLIKERMTQALRYFKDLADQNVLAQVWAPVRMGNQYVLTTSGQPFVLDPHSNGLYQYRTVSLMYMFSVNGENDGILGLPGRVFQHKLPEWSPNVQYYSNKEYPRRNHAQHYNVRGTLALPVFEPSEKSCIGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILEHPFTQICNESRQNALAEILEILTVVCETHKLPLAQTWVPCRHRSVLANGGGLKKCCSSFDGSCMGQVCMSTTDVAFYVIDAHMWGFHEACAEHHLQQGQGVAGKAFLSGNMCFCGNITQFCKTEYPLVHYALMFGLTSCFAVCLQSSHTGLDDYILEFFLPPKVTDLNEQKTMLGSILATMKQHFHSLKIAAGVELEEECSVEIIDATSERVYSRLKSIMITQPTKLPQGSDPLPNMGEILALETSEQQMVFLDDINGGSLDDRAGETSDQIYPLETKNIKKPSERKRGKTEKSISLEVLQNYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSTFPMAVGSFPETSNRFNQQASLSTQLAEPQMKENELDASKVSDSNRQTKVEHQLVGGRVQSPEKSGSSHEFGKCPKGPRTGSASSEDRANPTSHGSCHGSPPTESSPPKDIFITTNTDQYVVAGGSPELPPTSKLNSPPGYAMPNLVPTELQESFGGMLIEDAGSSKDLRNLCPAVADANVEDQLPEACAANPPLSDLGPKQCTNTLGDTMMPFAARREMKTVTIKATYREDIIRFRISLTSGMVELKEEVAKRLKLEVGTFDIKYLDDDQEWVLIVCDADLQECMDISRASGTNIIRLLVHDITSNLGSSCESSGE 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1266 983 FunFam RWP-RK domain-containing protein 885 969 - -
Lele48g1266 983 Pfam RWP-RK domain 589 637 IPR003035 -
Lele48g1266 983 ProSiteProfiles RWP-RK domain profile. 576 657 IPR003035 -
Lele48g1266 983 PANTHER PROTEIN NLP8 57 982 IPR045012 GO:0003700
Lele48g1266 983 Gene3D - 885 969 - -
Lele48g1266 983 CDD PB1_NLP 889 969 IPR034891 -
Lele48g1266 983 MobiDBLite consensus disorder prediction 689 777 - -
Lele48g1266 983 MobiDBLite consensus disorder prediction 1 27 - -
Lele48g1266 983 SUPERFAMILY CAD & PB1 domains 886 973 - -
Lele48g1266 983 SMART PB1_new 888 970 IPR000270 GO:0005515
Lele48g1266 983 MobiDBLite consensus disorder prediction 749 777 - -
Lele48g1266 983 Pfam PB1 domain 888 969 IPR000270 GO:0005515
Lele48g1266 983 MobiDBLite consensus disorder prediction 699 713 - -
Lele48g1266 983 ProSiteProfiles PB1 domain profile. 888 970 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1266 Lele-ChrLele48 17036077 17040383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1266 265 983 NLP Transcription Factor Family AT4G24020 55.061 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele48g1266 PB1 4.7e-19 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0179 45 1456527 1460821 Lele48g1266 48 17036077 17040383 hybridization
Lele46g0197 46 1187196 1191513 Lele48g1266 48 17036077 17040383 hybridization