Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1257 ATGGAGGCTCCCACTCTCACCGGCTTGCTCAATCGAATCTCCGCCGAATTCCCCTCCCGTCGTGCCATCTCCGTCTCCGGCAAGTTCGATCTCACCTATTCTCGTCTTATCGAACTCATCGAGCGCGCCGCTTCTCGTTTAGTCTCCTCCGGAATCAACGCCGGCGATGTCGTCTGTCTTACCTTCCCCAATACCGTCGAGTTCATCATAATGTTTTTGGCCGTGATTCGTGCACGAGCCACGGCTGCGCCGCTGAACCCCGCCTATACGGCCGAGGAGTTCGAGTTTTATTTATCCGACTCGGAGTCGAAGCTCTTACTGACGTCCCAAGAAGGAAATGCTCCGGCTCAAGCAGCGGCTTCGAAGCTTAATATCCCTCACGCGACGGCTTCGCTTTCCAAAGCCGATGACGCCGAGCTTAGTCTCTCACTGGCTCAGAACGAGTCAAGATCGGACTCGGCCGCCAAACTCGTTAACGACCCTTCCGACGTATCCCTATTCCTCCACACCTCTGGTACGACAAGCCGGCCCAAAGGAGTGCCTCTAACTCAGCACAACTTAGCCGCTTCGGTTCAGAATATAAAGTCCGTGTACAGACTCACTGAGTCCGACTCGACGGTGATCGTTCTGCCACTCTTTCACGTCCACGGACTCATTGCGGGATTACTGAGTTCACTCATTTCCGGGGCGGCTGTGACACTGCCGGCGGCTGGCCGTTTCTCGGCTTCCACGTTTTGGGCAGACATGCTGAATTATAACGCGACGTGGTACACGGCCGTCCCTACCATACACCAGATCATACTGGATCGTCACTCGAGTAAACCCGAACCCCACCCGAAACTCCGGTTTATTCGTAGTTGCAGCGCGTCGCTCGCACCAATTATATTGGGTCGTATGGAGGAGGCATTCGGAGCTCCGGTTTTGGAGGCCTATGCAATGACGGAAGCGTCCCATCTAATGGCATCAAACCCGTTGCCGGAGGACGGGCCACACAAGCCCGGGTCGGTGGGGAAACCAGTGGGTCAAGAAATGGCGATACTGAACGAGAAGGGAGAGATCCAGAACGCCGAAGTTGACGGAGAGGTCTGTATCAGGGGCTCGAATGTGACAAAAGGATACAAAAATAACTCTGAAGCTAATACGACAGCGTTCCAATTCGGATGGTTCCATACAGGTGACCTCGGGTTCTTGGATTCAGACGGGTATTTGCATCTGGTTGGACGAATGAAGGAACTCATTAATCGTGGAGGGGAGAAAATATCGCCCATAGAAGTGGATGCTGTCCTGTTATCGCATCCGGACATTGCTCAGGCGGTTGCTTTTGGAGTCCCAGACGACAAATATGGCGAAGAGATAAATTGTGCAGTGATAGCAAGAGAAGGATCAGAAATTGACGAGGAAGAGGTGTTTAAGTTTTGCAAGAAGAATCTTGCATCCTTCAAAGTCCCCAAGAAGGTTTTCATTACCGATTCTTTGCCAAAAACTGCCACCGGCAAGATCCTCCGTCGTCTTGTTGCTGAACACTTCGTTTCTCAGAAGTGA 1542 0.5259 MEAPTLTGLLNRISAEFPSRRAISVSGKFDLTYSRLIELIERAASRLVSSGINAGDVVCLTFPNTVEFIIMFLAVIRARATAAPLNPAYTAEEFEFYLSDSESKLLLTSQEGNAPAQAAASKLNIPHATASLSKADDAELSLSLAQNESRSDSAAKLVNDPSDVSLFLHTSGTTSRPKGVPLTQHNLAASVQNIKSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLISGAAVTLPAAGRFSASTFWADMLNYNATWYTAVPTIHQIILDRHSSKPEPHPKLRFIRSCSASLAPIILGRMEEAFGAPVLEAYAMTEASHLMASNPLPEDGPHKPGSVGKPVGQEMAILNEKGEIQNAEVDGEVCIRGSNVTKGYKNNSEANTTAFQFGWFHTGDLGFLDSDGYLHLVGRMKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAVIAREGSEIDEEEVFKFCKKNLASFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1257 513 Pfam AMP-binding enzyme 14 415 IPR000873 -
Lele48g1257 513 PANTHER ACYL-COA SYNTHETASE 6 511 - -
Lele48g1257 513 CDD FACL_fum10p_like 18 507 IPR045310 GO:0016874
Lele48g1257 513 FunFam 4-coumarate--CoA ligase 2 411 512 - -
Lele48g1257 513 Pfam AMP-binding enzyme C-terminal domain 424 499 IPR025110 -
Lele48g1257 513 Gene3D - 5 408 IPR042099 -
Lele48g1257 513 SUPERFAMILY Acetyl-CoA synthetase-like 5 510 - -
Lele48g1257 513 ProSitePatterns Putative AMP-binding domain signature. 167 178 IPR020845 -
Lele48g1257 513 Gene3D - 409 511 IPR045851 -
Lele48g1257 513 FunFam Peroxisomal-coenzyme A synthetase 5 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1257 Lele-ChrLele48 16945861 16949177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1257 5 512 Monolignol Biosynthesis Gene Families AT4G05160 31.689 4.69e-60 205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1257 48 16945861 16949177 Lele48g1257 48 16945861 16949177 ECH
Lele45g0186 45 1563257 1566272 Lele48g1257 48 16945861 16949177 hybridization
Lele46g0205 46 1279685 1284694 Lele48g1257 48 16945861 16949177 hybridization