Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1246 ATGTTTCCCAAGAACAAACAGACAAAGAGTCGGCGGCAGAACCCAGCTGGTCTGCAAGAAGATTACGATGATGTTCAAAAGAAGCTGATCCGAAGCTGGCCAACAGAAAATGGGAAGCGATCAGGATCAGATCGCTTAAATGAGGCTGCCAAACACATCAAACAGCTACAAAATAGGATCCAGGAACTGAGTGGTAAGAGGAACAGATTAAGGATGATGTGCAATAATTTGAATGTTGAAGACCCTGAGATTACAACATTAACCAAAGCTACAACAACTCATGACCCGCCAACAAATGTTATTACTGTTAGTCGAACTTTGGCTGGCATTGAGGTTGTTCTCAGTACAGTACAAATGTTTCCTGTTTCAAAACTATTGGATTTACTACTCAAAGAGGGGTTAAATGTTGTTCATTGTGTTCATACGAAAGTAGAAGGAAGGCAGATCTATACCATCCACACTGAGGTTTCTGGTGTAATTGGGATCGAATCATCTGCATTACAAAGAAAACTAACAGAATCAATTCCTTCTTCAACATGTTTATGGTTTGACCGTTTGGTACCTCAGGCTCTACCAGCTAGCCCTGCCGACAAATGTTGGTCCACCACAAAAGGGAAGAAGCATATTACACTGCCTTCTTCTTCCGACAATAATAATGGTGATCAGGCAAGTGTTTGTGATGATGAGAAGAAGATCGTTCGTAGGGAAACTGAAAGGAAAAGAAGGCTGCAAATGACCTCCCTTTGTGAATCTCTCCGATCTTTGCTACCTTTTGAGCTCATCAAGGGAAAGCGTTCAGTGTCTGATCACATAGGGGAGGCTGCAAGTTATATCAAAGATTTGCAGGAGAAAACCCAAGAACTCCAAATTAAGAGAGATAAGCTCAAACAAAAGGCTAATCCAAGTTTCCTTGGTGCTGGAATAGATGAAAGTTCTTCAAGCCATTCAAATATGGTTAAGTGTGTGAGCATTTCGCCTTTTCCTGGTGGCCTAGAAATTTCTGTAGACAGTGGCTTGGAGGAAAGTAGCTTTCCATTATCACTCTTGCTGGAAATATTGACGCAAGAAGGATGTAATGTTGTGAGCTGTGTGTCCACCCAAGTGAATGGGAGGCTATACAACTCTATTAAGTCTGAGGTGGATAACTTGGAAAGCCTTGATGTAGCTGGGCTGGAACAGAAACTCAATGCTGCAATCTTCTGGTCAAGTGTGACATATTCACAACAGCGGTTAGCACTGTGTATTGATATCTTGTGGAAAAGTGCAAATTTACACTCCTTTCAACTATGA 1290 0.4171 MFPKNKQTKSRRQNPAGLQEDYDDVQKKLIRSWPTENGKRSGSDRLNEAAKHIKQLQNRIQELSGKRNRLRMMCNNLNVEDPEITTLTKATTTHDPPTNVITVSRTLAGIEVVLSTVQMFPVSKLLDLLLKEGLNVVHCVHTKVEGRQIYTIHTEVSGVIGIESSALQRKLTESIPSSTCLWFDRLVPQALPASPADKCWSTTKGKKHITLPSSSDNNNGDQASVCDDEKKIVRRETERKRRLQMTSLCESLRSLLPFELIKGKRSVSDHIGEAASYIKDLQEKTQELQIKRDKLKQKANPSFLGAGIDESSSSHSNMVKCVSISPFPGGLEISVDSGLEESSFPLSLLLEILTQEGCNVVSCVSTQVNGRLYNSIKSEVDNLESLDVAGLEQKLNAAIFWSSVTYSQQRLALCIDILWKSANLHSFQL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1246 429 CDD bHLH_AtORG2_like 230 297 - -
Lele48g1246 429 SMART finulus 235 287 IPR011598 GO:0046983
Lele48g1246 429 MobiDBLite consensus disorder prediction 1 44 - -
Lele48g1246 429 Gene3D - 222 302 IPR036638 GO:0046983
Lele48g1246 429 Coils Coil 46 80 - -
Lele48g1246 429 MobiDBLite consensus disorder prediction 16 34 - -
Lele48g1246 429 Pfam Helix-loop-helix DNA-binding domain 231 282 IPR011598 GO:0046983
Lele48g1246 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 301 IPR036638 GO:0046983
Lele48g1246 429 Coils Coil 278 298 - -
Lele48g1246 429 MobiDBLite consensus disorder prediction 1 15 - -
Lele48g1246 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 281 IPR011598 GO:0046983
Lele48g1246 429 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 34 174 IPR015660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1246 Lele-ChrLele48 16842700 16847056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1246 235 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 37.079 2.11e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele48g1246 HLH 1e-06 No_clan