Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1245 ATGAACCCGTTGCATCCAGTTGGCGATGAAGATTTGTTCTTCCAGATTTCATCTCTGAATCGTTCTCCTCTCTCAATCCCAACAATCCCAGAACATGAGATCTTTCATGATCCTGCGGAAGAAGTAGTGAAGGATTACGAAAGCTTTCCACCTAATTTTGTAAGTGACGGAGTAATTATACCAAAGGGGAAGGGAAAGCAGAAGCAAAAGGAATTTCCTGCTAAAATTGCTGAAGATTCTGATAAGAAATGGATGCATAGAGAAACAGAAAGACAAAGGAGACAAGAAATGTCCACGCTTTGTGCCTCCCTCAGATCGGCTTTGCCTCTCGAATACATCAGGGGAAAGCGATCGGCATCAGATCAGATTGATGGGGCCGTGAAATATATCAAACAGCTAAAGAACAAGGTGAAGCAATTGAAGGCAAAGAGAGATGAATTGATGAAAAATGAACATGGAATCTCTGTTATTGTTCATCCTTACATGGGTGGAGTTGAGATTATGTGCAGTTATAGCTTCAGAGACTACGTTTTTACTCAGTCAATACTCTTGAGTATTTTGATTAAACAAGGGCTTAATGTGGTGAGCTGCACTTCTATCAAAAGGGATGAGATGTTCATTCACACAATTCGATTATTAGAGGATCAGTCTGATATATCTGAGAGTACTACTGATTACTCTGAACTGCAAAGAAAGCTTACTGCAGCAATATTATCTACAGAAAAAAGCTTAGCTACAGTTTGCAGCGTTTTGTGCATTGATGGAACTCTCACACGGAAATTATCTGTCAATCTTTAG 798 0.3972 MNPLHPVGDEDLFFQISSLNRSPLSIPTIPEHEIFHDPAEEVVKDYESFPPNFVSDGVIIPKGKGKQKQKEFPAKIAEDSDKKWMHRETERQRRQEMSTLCASLRSALPLEYIRGKRSASDQIDGAVKYIKQLKNKVKQLKAKRDELMKNEHGISVIVHPYMGGVEIMCSYSFRDYVFTQSILLSILIKQGLNVVSCTSIKRDEMFIHTIRLLEDQSDISESTTDYSELQRKLTAAILSTEKSLATVCSVLCIDGTLTRKLSVNL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1245 265 SMART finulus 87 139 IPR011598 GO:0046983
Lele48g1245 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 133 IPR011598 GO:0046983
Lele48g1245 265 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 73 235 IPR015660 -
Lele48g1245 265 Coils Coil 123 150 - -
Lele48g1245 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 154 IPR036638 GO:0046983
Lele48g1245 265 CDD bHLH_AtORG2_like 82 149 - -
Lele48g1245 265 Pfam Helix-loop-helix DNA-binding domain 83 134 IPR011598 GO:0046983
Lele48g1245 265 Gene3D - 73 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1245 Lele-ChrLele48 16836085 16837427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1245 81 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51790 40.132 6.80e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele48g1245 HLH 2.3e-08 No_clan