LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g1234	ATGGATGTTGCTAAGAGCAGCAGTGGTTCCGAACCTTCAACTTCTTACAGTTGTTTCAAAGTAGCAAATCTAAGTGAAACAATACTGGACACAAATCAGTCTGCAAATTTGAAAGATCGTTATCTTCTTGGCGAGCAGTTAGGTTGGGGACAGTTTGGTGTTATTAGGGCGTGCACGGACAAGTTAACTGGAGAGGTTTTAGCCTGTAAATCAATTGCTAAAGATAGATTGGTCACATCAGATGATCTGCGAAGTGTCAAACTTGAGATTGAGATAATGGCTAGGTTATCTGATCATCCAAATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGATTTTGTACATCTGGTGATGGAGCTTTGTGCTGGAGGTGAGCTATTTCACCGACTAGAGAAGAATGGACGATTTTCTGAATCTGAGGCCCGGGTTCTCTTTAGGCACCTCATGCAGGTGGTTTTGTATTGCCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAAAACATTCTCTTAGCAACAAGAGCCTCCTCATCTCCAATTAAACTGGCAGATTTTGGGCTTGCAACTTACATCAAGCCTGGACAAAGTTTGCATGGGTTAGTAGGGAGTCCATTCTATATAGCTCCAGAGGTACTTGCAGGTTCATATGACCAGGCTGCTGATGTTTGGAGTGCAGGTGTCATTCTTTACATTCTACTTAGTGGGATGCCTCCATTTTGGGGTAAGACCAAGTCGCGGATCTTTGAAGCTGTTAAGGCTGCTGACTTGAGGTTCCCATCTGAACCTTGGGATCACATTTCTAAATCAGCCAAGGATTTAATTAACGGTATGCTCTGCACAGAACCTTCTCGAAGGCTCACCGCTCAGCAGGTCTTAGATCATTGCTGGATGGAGAGCAATCAAACAAATCCTGAACATCTAATTGAACGTGACATCAAAAGTTGTGAGGAATGGGATGTTGGTGATAGCTCATTCTCTCTGTCCTTTATGCCCAGGAATCGGGACATCAGCTTTGGCGCCGAATCTCCTGAATGTGATGCTCAGTCACCAACTTTCACTTGTAGATCATCATTTTCTTCCTTTCTGGTGGAACCATCGACTACTTGTTCAGCTTTGGGTGGAGGGTTTTCATTTCGGAGTCCCGGTGATTCTGCTGGTTTGGACTTCTCTTCTCCAGTTTCTTCAATGCCTAGCTTCGCATTTCTCAGCGCCAATTCTGTTGTTGAGAAAATGAGTTGCACATTAGAGTTCTCAACCAATGAATCCGCGAAGACAATTGCTGAAGAATCAAGCTTGGGAAAACTACTTCTATCACCAGATTCTGCTCTTTCTTGTGGACCGGATATTAAGGCTAGTAATTGCAAGCCAGTGGACGCTAAAAGGACAGGTGGTACCAATGGACATAGGGTTTTAGGAATCCACAGCAAGAGAAACCGAACGATTGGACTCGGCGAATGTGAGCAAATTGAACTCGTGGTGACGGAATCTGTCATTCGATGGTCATCTTGCACGCAACTCCCAACATCTCTTAGGTCATCTCTTGTATGTTGA	1557	0.4406	MDVAKSSSGSEPSTSYSCFKVANLSETILDTNQSANLKDRYLLGEQLGWGQFGVIRACTDKLTGEVLACKSIAKDRLVTSDDLRSVKLEIEIMARLSDHPNVVDLKAVYEEEDFVHLVMELCAGGELFHRLEKNGRFSESEARVLFRHLMQVVLYCHENGVVHRDLKPENILLATRASSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGSYDQAADVWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDHISKSAKDLINGMLCTEPSRRLTAQQVLDHCWMESNQTNPEHLIERDIKSCEEWDVGDSSFSLSFMPRNRDISFGAESPECDAQSPTFTCRSSFSSFLVEPSTTCSALGGGFSFRSPGDSAGLDFSSPVSSMPSFAFLSANSVVEKMSCTLEFSTNESAKTIAEESSLGKLLLSPDSALSCGPDIKASNCKPVDAKRTGGTNGHRVLGIHSKRNRTIGLGECEQIELVVTESVIRWSSCTQLPTSLRSSLVC	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g1234	518	FunFam	Phosphoenolpyruvate carboxylase kinase	128	315	-	-
	Lele48g1234	518	Gene3D	Phosphorylase Kinase; domain 1	42	127	-	-
	Lele48g1234	518	CDD	STKc_CAMK	40	298	-	-
	Lele48g1234	518	Gene3D	Transferase(Phosphotransferase) domain 1	128	322	-	-
	Lele48g1234	518	Pfam	Protein kinase domain	43	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g1234	518	SUPERFAMILY	Protein kinase-like (PK-like)	39	369	IPR011009	-
	Lele48g1234	518	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Lele48g1234	518	PANTHER	SERINE/THREONINE-PROTEIN KINASE	30	316	-	-
	Lele48g1234	518	FunFam	Calcium-dependent protein kinase 1	43	126	-	-
	Lele48g1234	518	SMART	serkin_6	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g1234	518	ProSiteProfiles	Protein kinase domain profile.	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g1234	518	ProSitePatterns	Protein kinases ATP-binding region signature.	47	74	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g1234	Lele-ChrLele48	16727493	16729875	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g1234	24	306	EF-hand Containing Proteins	AT3G57530	49.117	1.11e-98	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Lele48g1234		Pkinase	3.1e-72	CL0016