LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g1227	ATGGTTTGTGTACTGCCCAATGGTGAGTTGCTGCATTATAAGCAAAGTGTTCTTTTACAGATGGCTATTCGCCCAATTTCTCCTTTCTGCTTCACGATTAGGGAGAACTGTCTTTTTATTGTAAAAAATTTGTTGGTTGTAGGGTTTGCCTTCATCTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCACTTGATCAGGTAGAATTTGGTCGAAAGGGACGCAGACTTCGTGTGGAATGGACAAAAAATGAACGTGGCATTAGAAGGCCTGGTACTGGTAGTTCGAGAAGACCTTCAGCAAATTCAAGGCCATCAAAGACTTTGTTTGTTATCAATTTTGATACATATCATACCAGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGAGTCATATGATGATGCCATCAAAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGGGTTATCACAGTTGAATTTGCTGCAGAGAATGACGACAACAAGAGGAATGCATATAGTCCTGATAGAAGTCATGATCGTCCACGTGATGTAGGCTATGATAGAAGGCGATCACCCAGTCCTTATCGCCGAGAAAGAGGAAGCCCTGATTATGGCCGTGGCACTAGCCCATATAGGAGAGAGAAAAGCAGCCCTGATTATGGCGATGGCTCTAGCCCATATAGGAGAGAAAAGAGCAGCCCTGACTATGGTCATAGCCGCAGTCGAAGTTCCCAACAGATTGAGAGAGGTAGCCCTGATTATAATCACAGGAGCCGTAGTCCATATAGAAGAGAGAGGGATGGTTCTGACCCTGTTCGTGGCTCTAGCCATAGTCCTGATCATAAAGAACCAGTTAGAACTGACCGTGGCAATTCTCACTCCCAAAGTCCTAATGGAAGAGAGATGGTAAGCCCTCAAAATGGTGGTTCCGATCAAAGTCCTTCCTATAGGAAGAGGGTTAGCCCTGAAAATGGTCACGGCTCTATAAGTAGTCCTGACGCAAGAGGCGATTCTAGTCCTTACAATGGTGATGGTGATGAAAATCGCCCAAATTCCATGCCTGAGCCAAAGGACAATGCTAACCATGATGATGCTCCTGAAAGTCCCATGAATGAAACATACCGCAGCAAAATAGGGGAGTGA	1194	0.4447	MVCVLPNGELLHYKQSVLLQMAIRPISPFCFTIRENCLFIVKNLLVVGFAFIYMEDERDAEDAIRALDQVEFGRKGRRLRVEWTKNERGIRRPGTGSSRRPSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESYDDAIKALEATNMSKLLDRVITVEFAAENDDNKRNAYSPDRSHDRPRDVGYDRRRSPSPYRRERGSPDYGRGTSPYRREKSSPDYGDGSSPYRREKSSPDYGHSRSRSSQQIERGSPDYNHRSRSPYRRERDGSDPVRGSSHSPDHKEPVRTDRGNSHSQSPNGREMVSPQNGGSDQSPSYRKRVSPENGHGSISSPDARGDSSPYNGDGDENRPNSMPEPKDNANHDDAPESPMNETYRSKIGE	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g1227	397	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	43	124	-	-
	Lele48g1227	397	Gene3D	-	41	101	IPR012677	-
	Lele48g1227	397	MobiDBLite	consensus disorder prediction	184	254	-	-
	Lele48g1227	397	MobiDBLite	consensus disorder prediction	184	397	-	-
	Lele48g1227	397	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	111	173	IPR000504	GO:0003723
	Lele48g1227	397	MobiDBLite	consensus disorder prediction	269	306	-	-
	Lele48g1227	397	SUPERFAMILY	RNA-binding domain, RBD	47	184	IPR035979	GO:0003676
	Lele48g1227	397	Gene3D	-	102	192	IPR012677	-
	Lele48g1227	397	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	41	86	IPR000504	GO:0003723
	Lele48g1227	397	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	109	180	IPR000504	GO:0003723
	Lele48g1227	397	MobiDBLite	consensus disorder prediction	367	387	-	-
	Lele48g1227	397	MobiDBLite	consensus disorder prediction	307	354	-	-
	Lele48g1227	397	SMART	rrm1_1	110	176	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g1227	Lele-ChrLele48	16669954	16671722	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g1227	48	202	Eukaryotic Initiation Factors Gene Family	AT1G49760	25.904	6.21e-07	49.7