Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1222 ATGAATGAATTTGAGCTCCAAAAGCGTGTCAAAAGCGAATTCCATCTTCCAGTCATCATCATGTCTGAAGATGGGAGGAAGAGTGTGATGTCGAGGAGTTTAGAGCAAGGAGCAGCGTTTTGCTTAGTGAAACCAGTGCGAAGAGAGGACTTGAGAGATGTGTGGCAGTATGCTGTGGCTGGCAGGAAAGAGAAACTCAGAGTTGAGAATGGCAGAATTGTATCAGTAAGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGTCTCTAATATAGCCTCTACACAGGATTCAACATCGCCTAAAAAGCAAAGGAAGAAGTCTTGCAAGAGAATACGCAGTGCTGATGAGGTGGTTGATAATGAAGAACTCATATTCTGTGGTCCAAAGAGGTCCAAGATTTTTTGGACTGTTGATCTTCACAGTCGCTTCTTGTTGGCCTTAAGGCACCTTGGCATGGACAAAGCTGTTCCAACCAAGATTCTCGAGATCATGAACGTGCCAGGTTTGACCAGAGAAAATGTTGCCAGTCATTTGCAGAAGTATCGCTTGTTTCTGAAGAGAATTGCAGAGAAAGGAATCCTTGAGGGATTACCTGAGAGAGCTTTGAGGTCAAGGTTTGCTATGGGGCTTCGCACAGATCTCATCAGAGACATCCAAAAAAGACTCACTCGTTTTCATGAAATTAGTTATTATCATCAACCTTACCGTACTTACGGAAATCCCCAGATTCCTCAAAATCCTCCAACAACCAGACCCATTCTCGCCAATCAAACCAGACTTGCCCCACCAAACTACCATGGTGGGACCAATCATACTTACGGAAACTTCCAACAGCCCCATTATCATAATCTTCATCGCCCTATCGTAAATGGAGGAGGGTTCATGACTTCTGCAAATAATGGTTTGATGAGTAACTATTCCAATCCCTCACTGGTGGGGAACAACAGAAGCTTCAACTATGGCCCAACTAATTATTATAATAATAATAACAATCATGGGATGTTAGTGCCTTATGGAAGCTCTGGCCTGCAACCAAGTCCTGGGACATATTATAATAACCACCATGGAACTCAACTGATGAACAACAATAATAACCGTGGAATGACAGTGCCTTATGGAAGCCATGGCTTCCAACCAAATCCTAGTACTTACTATAATAACCACTATGGAACTCAACTGAACAACGACAATGCTTCTCTTACAGTTGATGCGTTGAATGTTCAGAATGTTGGTTATACAGTTCATAACAATAATGGGAGTGATTCAAACAATGCAGTTGTGCCTGTCTCATCATCCTCAGTTGCTAATGTCCGTGTTGATGAACCAACTCGAGCAAACATATCTGCAAGTCTTAATCCATCTTTCCCTCATCAGCAGTCAATTAATGGTATTAGGAATGCTGCCACTTCAGTGAATCAGGGGGAAGTTGGTCAAATGGATGATCTTAATGAACTGTTCCTCATGCTAGACGACATGGTTTCTCTAGACAAGACTGCAGAGAGCCCTCGTGCTGGTGAACTTTCAACTTCTGACATTCTTAGCTCCTTCAATGTTGAAGACTACATTGAGCTGGTGATGAGGAACTATTCATCCGCAAACTTGGGGCGCTTGAACATGTTCGTGGAGGAAAAGGCTAATTCACCATCAGCAAACTCAACCCCTCGAGAGCAGGCAAGCCATCTTGATTGGGACATGGATCTCATTGAAACGCTGCTCTTGGATGCTACAGATCCCAGCCTGAATATATTGGAAATACTTAAGTGGTGCCACGTGGTTGATGATCTCTCCTCGTGGCCGCGAGATGTATCGCCGACTGAGCTCTGTTGTACTTTTCGACACGTGTCCGACGTTTACCGGGCAGCGCCGTCAGGCCTGGCTCTACAGGGCTACTTAGACTCCAGTCAACAAGGGGCGGTGCCCCCCATGGCACCTTCTCGGGTGGCTGGAGGGTTAGCCCATTCATCATCAAGTTCTGGAATATTCTATCAAGGAGATGGGCAATCACAGAATGCTGTTGATTCTCACTTTAGTTCGTGTTTTGGTAACACATCCAACTCATTTCCTGGAACTGGACGTTCAAATCTGGGTCCAGTTTCTGGTGACATGAGTAATGCAATTCTAAACAGTGTGGTAAATTCAGGGCTAAGTGTTGGAGCGAGTTCATTAGTCACAGATGCAAACTCTGCACTATCTGGGGGACCCCGTTTGCAGAGAAGCGCTAGCAATAACACAGAATCCTACTTACGTTTACCTGCATCACCCATGTCATTCTCCTCAAATAATATTAGTATTTCGGGGTCATCAGTTATGGATGGTTCTTCTGTAGTACAACAGAGCTCTCATCAAGACCAGAATGTTCAACAACTGCAAAAGAATCATGCGCAAATGCAGGGTGCTTCTAGTGCAACATCTCTGCCTGCAGCTCAAACTGGCCCAGCTCCAGTGTCAATGGGTACGCGAGGACATGGATCTGGATCTTTGATACAAGATCCAAATAATCTATCCCAGATGCATAAGAAACCTCGGATTGATATCAAACAAGAAGATATAATGCATCAGCAGGTTATACAACAGCTTCTTCAGAGGCAGGACCCCATGCAGTTCCAGGGTCGTAATCCCCAACTACAGGCTTTGCTCCAGCAGCAGAGACTGAGGCAACATCAACAGCAACAGCAAATCCTTCAGTCAATGCCACAGTTACAGAGAGCTCACTTGCAACAGCAGCAGCAGCAGCAGCAACATATGCAATTGAGGCAGCAGTTACAACAAGAAGCAATGCAGCCATCTTCTTCCATGAAGCGCCCATATGATAGTGGTGTGTGTGCCCGTCGTTTGATGCAATACCTATATCATCAAAGGCAGCGACCAAATGATAATAGTATTGCCTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGAAGCGGTGGTGTTTGTCATTATATGATAACGTTGGGCAACATACTCTTGGTGTTTTCCCCCAAGCAGTTATGGATGCATGGCAGTGCGACATATGTGGTTCTAAATCAGGAAGGGGATTTGAGGCAACTTTTGAAGTACTGCCCAGACTTAACAAAATAAAATTTGGCAGTGGGGTGATCGATGAACTTATGTTTTTGGACTTGCCCCGTGAGCATAGATTTCCTTCTGGTTTAATGATGCTAGAATATGGAAAGGCGGTTCAAGAGAGTGTGCATGAGCAGTTGCGTGTTGTTCGTGTGGGTCAACTCCGCATCATATTTACACAAGATCTGAAGATATTATCTTGGGAGTTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAGCCAATTGGTTCAAGTGGCTGAAAAGTGCCAGCGTTCTATTACTGAAAGTGGATCTGATGGGATTTCTCAGCAGGATTTGCAGACAAACAGCAATATGGTAATAACAGCTGGGTGTCAGCTGGCAAAGAGTTTGGACCTACAGTCTCTGAACGACTTGGGTTTCTCAAAACGATATGTGAGGTGTTTGCAGATATCGGAGGTTGTGAATAGCATGAAGGATCTGATGGATTTCTGCCGAGACCACAAAGTTGGGGCACTTGAGGGCTTGAAAAATTATCCTAGACATGCAACTGCAGCCAAGCTCCAGATGCAAAAGATGCAGGAGATGGAACAGTTAGCGAATGTTCAAGGTCCGCCAACTGACCGGAACACACTTAATAAGCTAATGGCATTGCATCCTGGATTGAATAACCAAATCAACAACAACCCTAATCTTGTTAATCGCGGTGCTTTGAGTGGATCTGCACAGGCTGCATTGTCACTGACTAACTACCAGAATATCCTCGTGAGGCAAAACTCCATGAATTCAACCCCCAACTCACTTCAGCGAGAAGCATCTCCCTCCTTCAATAATTCAAACCAGAGCCCCTCTTCACAGTTTCAAGGTGCTGCTGCTGCTTTGCTTCCAGGATCCATGCAGAATTTACCTGTCAGCGGTTTCTCTAGTCCCCATCTAACTCCACAGCAGCAGCGGCTTCAACAACTCAAACAGCACTCATTAAGTGCGAATAGCTTGCTGCAACAAAATCATCCACCGGGCTCCCAATCAAATCAGGCTCTACCACCCCAGATGCTCCAGCAACTAGTTCAGGAATTGTCGAATACCAGTGGAGTTCAACAGCAGTTCCATGCTGGACCCAACTCTAACACAAATAATGGTTTGGGTTTTGGAGGTAACCCCCCACCAGCATCTGGAGAAACTTCCAATGTTTCAGGAAGTAACGGACCTGCTGCTCCTAGCAGGAGCAACAGCTTCAAAGCTGCTTCAAACAGTGATTCTTCTGCAGCTGGTGGCAACAATGGATTCAACCAAAGAGCATCTGATATAGCACAAAATCTCCATCTGCAAGATGTGGTTCAGGATATTGCCCGCGAGTTCACTGATAATGGCTTCTTTAGTAGTGACCTCGATGACTATGGGTGGAAGGCATGA 4500 0.4516 MNEFELQKRVKSEFHLPVIIMSEDGRKSVMSRSLEQGAAFCLVKPVRREDLRDVWQYAVAGRKEKLRVENGRIVSVRGGGGGEEEEEEEVSNIASTQDSTSPKKQRKKSCKRIRSADEVVDNEELIFCGPKRSKIFWTVDLHSRFLLALRHLGMDKAVPTKILEIMNVPGLTRENVASHLQKYRLFLKRIAEKGILEGLPERALRSRFAMGLRTDLIRDIQKRLTRFHEISYYHQPYRTYGNPQIPQNPPTTRPILANQTRLAPPNYHGGTNHTYGNFQQPHYHNLHRPIVNGGGFMTSANNGLMSNYSNPSLVGNNRSFNYGPTNYYNNNNNHGMLVPYGSSGLQPSPGTYYNNHHGTQLMNNNNNRGMTVPYGSHGFQPNPSTYYNNHYGTQLNNDNASLTVDALNVQNVGYTVHNNNGSDSNNAVVPVSSSSVANVRVDEPTRANISASLNPSFPHQQSINGIRNAATSVNQGEVGQMDDLNELFLMLDDMVSLDKTAESPRAGELSTSDILSSFNVEDYIELVMRNYSSANLGRLNMFVEEKANSPSANSTPREQASHLDWDMDLIETLLLDATDPSLNILEILKWCHVVDDLSSWPRDVSPTELCCTFRHVSDVYRAAPSGLALQGYLDSSQQGAVPPMAPSRVAGGLAHSSSSSGIFYQGDGQSQNAVDSHFSSCFGNTSNSFPGTGRSNLGPVSGDMSNAILNSVVNSGLSVGASSLVTDANSALSGGPRLQRSASNNTESYLRLPASPMSFSSNNISISGSSVMDGSSVVQQSSHQDQNVQQLQKNHAQMQGASSATSLPAAQTGPAPVSMGTRGHGSGSLIQDPNNLSQMHKKPRIDIKQEDIMHQQVIQQLLQRQDPMQFQGRNPQLQALLQQQRLRQHQQQQQILQSMPQLQRAHLQQQQQQQQHMQLRQQLQQEAMQPSSSMKRPYDSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVGQHTLGVFPQAVMDAWQCDICGSKSGRGFEATFEVLPRLNKIKFGSGVIDELMFLDLPREHRFPSGLMMLEYGKAVQESVHEQLRVVRVGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVSQLVQVAEKCQRSITESGSDGISQQDLQTNSNMVITAGCQLAKSLDLQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDHKVGALEGLKNYPRHATAAKLQMQKMQEMEQLANVQGPPTDRNTLNKLMALHPGLNNQINNNPNLVNRGALSGSAQAALSLTNYQNILVRQNSMNSTPNSLQREASPSFNNSNQSPSSQFQGAAAALLPGSMQNLPVSGFSSPHLTPQQQRLQQLKQHSLSANSLLQQNHPPGSQSNQALPPQMLQQLVQELSNTSGVQQQFHAGPNSNTNNGLGFGGNPPPASGETSNVSGSNGPAAPSRSNSFKAASNSDSSAAGGNNGFNQRASDIAQNLHLQDVVQDIAREFTDNGFFSSDLDDYGWKA 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1222 1499 PANTHER LIM DOMAIN-BINDING PROTEIN 685 1488 IPR029005 -
Lele48g1222 1499 Coils Coil 902 929 - -
Lele48g1222 1499 MobiDBLite consensus disorder prediction 1330 1353 - -
Lele48g1222 1499 MobiDBLite consensus disorder prediction 770 812 - -
Lele48g1222 1499 MobiDBLite consensus disorder prediction 770 837 - -
Lele48g1222 1499 Pfam LIM-domain binding protein 946 1206 IPR029005 -
Lele48g1222 1499 Gene3D - 130 191 - -
Lele48g1222 1499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 188 IPR017930 -
Lele48g1222 1499 MobiDBLite consensus disorder prediction 77 108 - -
Lele48g1222 1499 MobiDBLite consensus disorder prediction 1292 1317 - -
Lele48g1222 1499 Gene3D - 1 127 - -
Lele48g1222 1499 SUPERFAMILY CheY-like 1 62 IPR011006 -
Lele48g1222 1499 SUPERFAMILY Homeodomain-like 130 189 IPR009057 -
Lele48g1222 1499 MobiDBLite consensus disorder prediction 1393 1460 - -
Lele48g1222 1499 ProSiteProfiles Response regulatory domain profile. 1 59 IPR001789 GO:0000160
Lele48g1222 1499 FunFam Two-component response regulator 129 191 - -
Lele48g1222 1499 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 186 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1222 Lele-ChrLele48 16600775 16612392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1222 934 1212 C2H2 Transcription Factor Family AT1G43850 58.065 1.06e-102 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele48g1222 LIM_bind 5e-56 No_clan