Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1209 ATGGCTTTGCCTTCCAGTCTTCTTCTTCATTGCCTTTTCTTGTTCCACCTCTGCTGTTTCCTTGCTTTTGCTTTTACGCACCAGACTGATGAAAACCCTGAGAAAAATTATCTCCTTTCTTTCAAAACCAGCCTCCATAACCCACAGCCTCTTGCTTCATGGAACTCCTCAACCCCACACTGCAACTGGGTTGGCGTTACTTGTGAGCTCGACCGAGTTACCTCACTTTCTCTTCCGACTCTGAACCTCAGAGGTCCACTCTCTTCGTCCCTCTTCTCCCTTACCGGCCTTACCGTCCTTAACTTATTCTCCAACGCACTCTCTGGTGATATTCCTCCACAGATAGCTAACATGAGAAACTTGAGGGAGCTCAATCTAAGTTATAATCAGTTTTCAGGGGAAATTCCGGACGAGCTAAGCGGTTTGACTCAGCTTACAACTCTCGCACTCAGCTCCAACTGGTTCAACGGAAAAATCCCGCCGGAGCTGGGGTCCCTGTCACAACTCCGTGTCCTCGACCTCTCTGGTAATGACCTCACCGGAACCTTACCTGAACGCATCGGAAACCTGAGTCAGCTTCAGTTCCTCGACCTCAGCAACAATCTTCTCTCAGGTTCTCTACCCTTGACTCTTTTCACGGGAACTCTGTCTTTGATTTCCGTTGACGTTTCAAACAATTCGTTTTTTGGTCCACTACCACCGGAAATCCGTAACTTGAGGAATATCACCGCCCTTTACGTTGCCTCTAATAAATTTACGGGTAGGTTGCCTCCTGAACTTGGCGAGCTCTCGCGGCTTCAAGTGCTTTATGCACCTTCTAGTTCCATAGAAGGCCCATTGCCTGAAGAAATGTCGAACCTAAAGTCATTGTCTAATCTTGATCTTTCTTACAACCCATTGAATTGTTCGATACCCAAGTTCATTGGGAAGCTTCAGAATTTGAAAGTGCTCGACCTTTCTTTCGCTCAGCTTTCTGGCTCCATACCGTCTGAGCTAGGAAGTTGCAGAAACTTGAGCTCTGTGATGCTTTCTTTCAACTCTCTTTCTGGGTCATTGCCAGAGGATCTTTCCGAGCTTCCCATGGTGTCATTCATAGCTGAAAGGAATCAGTTTCATGGACTTTTGCCTGCTTGGCTTGGAAGGTGGAATCAGATTGATACTCTCTTGCTTTCGCAGAATAGATTTTCTGGTAGAATTCCTCCTGAGCTTGGGAATTGCTCTTCATTGGAGCACCTCAGTTTGAGAAGTAACTTGCTGATAGGTCCCATACCTGAGGAGCTATGTAATGCCGCTTCACTTTCGGAGATTGACTTTGAAGATAACTTCCTTTCGGGTACAATTGAGAAAGCATTTGTTAGGTGTAAGAACCTCATTCAGTTAGAATTGATGAAGAATCAGATCACTGGTTCTATCCCACAGTACCTTTCAGAGCTTCCTTTGATGGTGCTTGACCTTGACTCAAACAATTTTAGTGGAAGCATACCTTCAAGTCTGTGGAATTCATCAACTCTAATGGAGTTTTCTGCTGCAAATAATCGTCTGCAGGGCTCTCTTCCTGCGGAGATTGGGAACGCAGTTCTTCTAGAGAGGCTTGTCCTTAATAACAATCAACTGACGGGTACTATACCCAAGGAAATTGGGAATCTCACAGGTCTATCTGTTCTTAATTTGAATGGAAATCTTCTTGAAGGGAATATTCCATCAGAGCTAGGAGATTGCATTTCACTGACAACCTTAGACCTTGGATATAATCGACTGAATGGATCTATTCCAGATGAACTAGTGGAACTGAGCCAATTACAGTGTTTGGTTCTTTCCCATAATAATCTTTCTGGGTATATTCCTGCAAAACGATCTTCAGATTTTAGCAGAATTGCCATCCCTGATTTGAGCTTTGTTCAACACCTTGGAGTATATGATCTGTCCCATAACAAATTGTCTGGGATTATACCTGATGAATTGGGGAGCTGTATGGTCGTTGTGGATCTTTTGCTCAGCAGCAACAGGCTTTCTGGGAGTATACCAAGCTCACTCTCTCGCCTGACAAATCTTACAACTCTAGATTTGTCTGGTAACTTCTTGTCAGGTTCCATTCCACCAGAACTTGGAGATTCCCTCAAGCTACAAGGATTATATCTGGGACATAATCAGCTTAATGGTACCCTCCCTGAAAGTTTTGGGAAAATGACCAGTTTGGTGAAGTTGAATTTGACAGGAAATAAGTTGTCTGGTCCGATTCCAATTAGCTGTGGGAACATGAAGGAGCTGACTCACTTAGATTTGAGCTCTAATGAGCTTAGTGGACAGCTTCCATCCTCTCTATCTGGTCTACAAAGCCTTGTTGGTCTTTATGTGCAGCAGAACAAACTTTCTGGCCAACTAGATTTGCTCTTCTCCAATACCATGACGTGGAGGATTGAGACAATGAATTTGAGCGCCAATTCCTTCAATGGGGATTTGCCAAGTTCTTTGGGAAACCTTTCTTACTTGACAAATTTGGATGTTCATGGAAATATATTCTTGGGAGAGATTCCATTGGAACTTGGGAATCTAGTTCAGCTGGAGTACCTCGATGTTTCTGGGAACAGGTTATATGGAAAGATTCCTGAGAAAATTTGCAGCCTAGTTAATTTGAACTACCTTGATTTGTCTCAAAACAGATTGGAAGGGCCTATACCCAGAAGCGGTATTTGCCAGAACCTATCAAGATTTAGATTGACAGGGAACAAAAAACTCTGTGGGCGGATTTTGGGAGTCAATTGCCCAATCAAAGGCATTGGTAGATTTTCATTGTCTAATGCGTGGCAACTTGCTGGGATTGCCATTACAATCACACTGATGACTCTGAGCATTGCATTTGTTCTACACAGATGGATTGGCAGGAGGCAAAATGATCCAGAAGACCTTGAGGAACACAAGCTAAACAACTACGTGGATCAAAATCTTTATTTCTTGAGCAGTAGCAGATCAAAGGAACCTCTGAGTATAAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAACTAACTCTGGAGGATATCCTTGAAGCTACTGGCAACTTCAGCAAGACCAACATAATTGGAGATGGAGGTTTTGGGACTGTATACAAGGCTACTCTACCCAATGGCAAAACAGTTGCAGTAAAGAAGCTGAGTGAAGCTAAAACGCAGGGCCATCGCGAGTTCATGGCCGAAATGGAAACTTTGGGCAAGGTGAAGCATCAGAATCTTGTTCCACTTCTTGGCTATTGCTCCCTGGGGGAAGAGAAACTCCTTGTTTATGAATACATGGTGAATGGAAGCTTAGATCTATGGTTGAGAAACAGGACTGGTGGAGCCCTTGAAGTTCTTGACTGGAACAAAAGGTACAAAATTGCAACTGGTGCAGCCAGAGGATTAGCTTTCCTTCATCATGGGTTCATCCCCCACATCATTCACAGAGACATTAAAGCTAGCAACATATTGCTAAATGAAGATTTTGAGCCAAAAGTTGCAGACTTTGGACTTGCTAGGCTTATCAGTGCCTGTGAGTCACATATCACTACTGACATTGCTGGAACATTCGGGTACATTCCGCCGGAGTATGGACAGAGTGGGAGGTCCACAATAAGAGGAGATGTCTATAGTTTTGGGGTCATTATGCTTGAACTGGTGACTGGAAAAGAACCAACAGGGCCTGATTTTAAAGACATTGAAGGTGGGAATCTGGTGGGGTGGGTTTTTCTGAAGATCAAGAAGGGACAGGCTGCTGATGTTCTCGATCCAAAGGTTCTGGACGCTGATTCGAAGCCGATGATGCTTCGGATGCTGCAGATTGCTTGTGTTTGCCTCTCTGAGAATCCTGCAAACAGGCCTACCATGCTTCAGGTGTTCAAGCTTCTGAAGGGGATCAAAGGAGAGTTAGTCTAG 3906 0.4414 MALPSSLLLHCLFLFHLCCFLAFAFTHQTDENPEKNYLLSFKTSLHNPQPLASWNSSTPHCNWVGVTCELDRVTSLSLPTLNLRGPLSSSLFSLTGLTVLNLFSNALSGDIPPQIANMRNLRELNLSYNQFSGEIPDELSGLTQLTTLALSSNWFNGKIPPELGSLSQLRVLDLSGNDLTGTLPERIGNLSQLQFLDLSNNLLSGSLPLTLFTGTLSLISVDVSNNSFFGPLPPEIRNLRNITALYVASNKFTGRLPPELGELSRLQVLYAPSSSIEGPLPEEMSNLKSLSNLDLSYNPLNCSIPKFIGKLQNLKVLDLSFAQLSGSIPSELGSCRNLSSVMLSFNSLSGSLPEDLSELPMVSFIAERNQFHGLLPAWLGRWNQIDTLLLSQNRFSGRIPPELGNCSSLEHLSLRSNLLIGPIPEELCNAASLSEIDFEDNFLSGTIEKAFVRCKNLIQLELMKNQITGSIPQYLSELPLMVLDLDSNNFSGSIPSSLWNSSTLMEFSAANNRLQGSLPAEIGNAVLLERLVLNNNQLTGTIPKEIGNLTGLSVLNLNGNLLEGNIPSELGDCISLTTLDLGYNRLNGSIPDELVELSQLQCLVLSHNNLSGYIPAKRSSDFSRIAIPDLSFVQHLGVYDLSHNKLSGIIPDELGSCMVVVDLLLSSNRLSGSIPSSLSRLTNLTTLDLSGNFLSGSIPPELGDSLKLQGLYLGHNQLNGTLPESFGKMTSLVKLNLTGNKLSGPIPISCGNMKELTHLDLSSNELSGQLPSSLSGLQSLVGLYVQQNKLSGQLDLLFSNTMTWRIETMNLSANSFNGDLPSSLGNLSYLTNLDVHGNIFLGEIPLELGNLVQLEYLDVSGNRLYGKIPEKICSLVNLNYLDLSQNRLEGPIPRSGICQNLSRFRLTGNKKLCGRILGVNCPIKGIGRFSLSNAWQLAGIAITITLMTLSIAFVLHRWIGRRQNDPEDLEEHKLNNYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLEDILEATGNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGGALEVLDWNKRYKIATGAARGLAFLHHGFIPHIIHRDIKASNILLNEDFEPKVADFGLARLISACESHITTDIAGTFGYIPPEYGQSGRSTIRGDVYSFGVIMLELVTGKEPTGPDFKDIEGGNLVGWVFLKIKKGQAADVLDPKVLDADSKPMMLRMLQIACVCLSENPANRPTMLQVFKLLKGIKGELV 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1209 1301 Pfam Protein tyrosine and serine/threonine kinase 1023 1292 IPR001245 GO:0004672|GO:0006468
Lele48g1209 1301 SUPERFAMILY L domain-like 46 362 - -
Lele48g1209 1301 Pfam Leucine rich repeat 682 742 IPR001611 GO:0005515
Lele48g1209 1301 Pfam Leucine rich repeat 96 153 IPR001611 GO:0005515
Lele48g1209 1301 Pfam Leucine rich repeat 551 610 IPR001611 GO:0005515
Lele48g1209 1301 Gene3D Ribonuclease Inhibitor 141 213 IPR032675 -
Lele48g1209 1301 FunFam serine/threonine-protein kinase BRI1-like 2 981 1095 - -
Lele48g1209 1301 PANTHER RECEPTOR-LIKE PROTEIN 55 808 1297 - -
Lele48g1209 1301 FunFam Leucine-rich repeat receptor protein kinase EMS1 363 622 - -
Lele48g1209 1301 FunFam Leucine-rich repeat receptor-like kinase 33 143 - -
Lele48g1209 1301 ProSitePatterns Protein kinases ATP-binding region signature. 1026 1049 IPR017441 GO:0005524
Lele48g1209 1301 Gene3D Ribonuclease Inhibitor 622 923 IPR032675 -
Lele48g1209 1301 Gene3D Ribonuclease Inhibitor 214 363 IPR032675 -
Lele48g1209 1301 Gene3D Ribonuclease Inhibitor 364 621 IPR032675 -
Lele48g1209 1301 Gene3D Transferase(Phosphotransferase) domain 1 1096 1300 - -
Lele48g1209 1301 FunFam LRR receptor-like serine/threonine-protein kinase 144 214 - -
Lele48g1209 1301 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 629 924 - -
Lele48g1209 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1143 1155 IPR008271 GO:0004672|GO:0006468
Lele48g1209 1301 Gene3D Ribonuclease Inhibitor 33 140 IPR032675 -
Lele48g1209 1301 SUPERFAMILY L domain-like 630 914 - -
Lele48g1209 1301 SMART LRR_sd22_2 851 877 - -
Lele48g1209 1301 SMART LRR_sd22_2 753 779 - -
Lele48g1209 1301 SMART LRR_sd22_2 287 316 - -
Lele48g1209 1301 SMART LRR_sd22_2 166 192 - -
Lele48g1209 1301 SMART LRR_sd22_2 681 713 - -
Lele48g1209 1301 FunFam serine/threonine-protein kinase BRI1-like 2 1096 1300 - -
Lele48g1209 1301 CDD STKc_IRAK 1026 1296 - -
Lele48g1209 1301 PRINTS Leucine-rich repeat signature 756 769 - -
Lele48g1209 1301 PRINTS Leucine-rich repeat signature 875 888 - -
Lele48g1209 1301 Gene3D Phosphorylase Kinase; domain 1 983 1095 - -
Lele48g1209 1301 FunFam leucine-rich repeat receptor protein kinase EMS1 215 362 - -
Lele48g1209 1301 ProSiteProfiles Protein kinase domain profile. 1020 1301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g1209 1301 SMART serkin_6 1020 1293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g1209 1301 ProSiteProfiles Leucine-rich repeat profile. 120 143 IPR001611 GO:0005515
Lele48g1209 1301 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Lele48g1209 1301 Pfam Leucine Rich Repeat 756 777 IPR001611 GO:0005515
Lele48g1209 1301 Pfam Leucine Rich Repeat 168 190 IPR001611 GO:0005515
Lele48g1209 1301 SUPERFAMILY Protein kinase-like (PK-like) 1001 1293 IPR011009 -
Lele48g1209 1301 SMART LRR_typ_2 851 875 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 190 214 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 118 142 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 311 335 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 166 189 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 597 621 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 549 573 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 777 800 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 239 263 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 681 705 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 94 117 IPR003591 -
Lele48g1209 1301 SMART LRR_typ_2 753 776 IPR003591 -
Lele48g1209 1301 SUPERFAMILY RNI-like 368 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1209 Lele-ChrLele48 16516837 16520742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1209 29 1296 Receptor kinase-like Gene Family AT5G07280 58.870 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lele48g1209 PK_Tyr_Ser-Thr 5.2e-45 CL0016