Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1208 ATGGCTCCGCCGCCGGCGGATCACAACGGCGAATCCACGGCCGGTGACACCCAGAGATCTATTCCAACACCGTTTCTCACCAAAACGTATCAGCTCGTCGACGATGGCACCAAAGACGATGTGATTTCGTGGAACGAAGATGGATCTACTTTCATCGTGTGGAACCCTACCGAATTCGCCAGAGATTTGCTTCCTAAATATTTTAAGCACAACAACTTCTCTAGCTTTGTTCGCCAACTCAACACCTATGGATTCAGGAAGGTTGTACCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGCAGAGGCGAGAAACGGCTTCTGTGCGAAATACAGCGACGGAAGATTTCAACGCCTTCGCCTTCGCCGCCGACAGCGACGTCGCCGGCATCCAAGGCCGGAGCCACTCCGACTGTGGCACTACCGGCGCCGGTGCTGTTGACTTCTATACCGACGGCGATGCCGATGATATCGACATCAAACTCAGACGAGGAGCAAGCGATTTCGTCGAATTCGTCGTCCTCAAAAGCTCCGGTTGAGCTCATGGACGAGAACGACAGGCTGCGAAAAGAGAACGGGCAGCTGTCGAAGGAATTAACTGAGATGAGATCTCTGTGTAACAATATTTTCTCCCTGTTATCCAACTACAACAACCAAATCGATGGTGCTACGCAAGGAAAAGACACCATGAAACCGCTGGATTTGATGCCGTCGAAACGGAACTCCGGTGAGGAGGAGCCGTCGGCGGTGGATGAGTTAAATCCGAAGCTGTTTGGGGTGGCGATTGGTGCGAAGAGAGCGAGAGGAGCGGAAGAGGAGGACACACTGTTAAGCTTGCATCAGCCGGGGCCAGCGGAGGTGAAATCTGAGCCGTTGGACTGTCAGAACCATCGAGAGTGGCCGGATCAATGCGATAGAGCTAATCAGAGAGTGTGTATTAGCACACAAGTGAGGGAATACGATTAG 966 0.5248 MAPPPADHNGESTAGDTQRSIPTPFLTKTYQLVDDGTKDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISTPSPSPPTATSPASKAGATPTVALPAPVLLTSIPTAMPMISTSNSDEEQAISSNSSSSKAPVELMDENDRLRKENGQLSKELTEMRSLCNNIFSLLSNYNNQIDGATQGKDTMKPLDLMPSKRNSGEEEPSAVDELNPKLFGVAIGAKRARGAEEEDTLLSLHQPGPAEVKSEPLDCQNHREWPDQCDRANQRVCISTQVREYD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1208 321 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g1208 321 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g1208 321 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g1208 321 FunFam Heat stress transcription factor B-4 17 115 - -
Lele48g1208 321 MobiDBLite consensus disorder prediction 160 179 - -
Lele48g1208 321 Gene3D - 17 115 IPR036388 -
Lele48g1208 321 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 238 IPR027725 -
Lele48g1208 321 MobiDBLite consensus disorder prediction 160 181 - -
Lele48g1208 321 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g1208 321 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g1208 321 Coils Coil 185 205 - -
Lele48g1208 321 MobiDBLite consensus disorder prediction 115 134 - -
Lele48g1208 321 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lele48g1208 321 MobiDBLite consensus disorder prediction 1 21 - -
Lele48g1208 321 MobiDBLite consensus disorder prediction 113 136 - -
Lele48g1208 321 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1208 Lele-ChrLele48 16511469 16512517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1208 1 312 HSF AT5G62020 47.130 5.33e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele48g1208 HSF_DNA-bind 6.4e-33 CL0123