Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1197 ATGGGGCGGCAGCCAGGTGATAAGGCTAAACCTAAACACAGAAAAGGGTTATGGTCACCTGAAGAAGACAATAAACTCAGAAACTATATCCTCAAGTTTGGCCTTAGCTGCTGGAGCTCTGTTCCCATCAACGCAGCACAGCATTTACCAGGAAGGACGGATAATGAGATAAAGAATCACTGGCATTCATATCTGAAAAAGAAAGTGGCCAAGGCAGAGGAAATACAATCTCATAATAACAATAACAATAAACAAATTCAGTATGCTAGCTCAAGCTCAGATACCTTTGATTCCTCTTCATCATCAACAAGTCAAAATCCAGCAATAATCCCAATCTCTGATCACTTCTCTTCTTCTTTGCAAAACTATAACTTCTCTTCTTCCACTCACAGCTCCTTACCAAAACTTCTATTTGCCGAGTGGCTTTCGCTAGATCGAGCGAACAGCGCGATCCCTGCGAATTCGGGTGATGACCCTTTTGTGTTTGGAAATGGAAGTTTTGATCAGTACTCAGATTTCCATGAAGCTGCAATTCATAATGGCGTTTCAGAAGGAGGAAGCTATGGTGGAGAGTTTCATAATGTTCTAACAACCCCAAATGTTACTGAAGTCTTCAATTCACAGTTCAAGATGGCAAATCAAATGGCAGAAAATAATGGGGTCATTCATTTCCCAAGTTTCAGCATGAACAATGATGAAATGTACATATAG 711 0.4065 MGRQPGDKAKPKHRKGLWSPEEDNKLRNYILKFGLSCWSSVPINAAQHLPGRTDNEIKNHWHSYLKKKVAKAEEIQSHNNNNNKQIQYASSSSDTFDSSSSSTSQNPAIIPISDHFSSSLQNYNFSSSTHSSLPKLLFAEWLSLDRANSAIPANSGDDPFVFGNGSFDQYSDFHEAAIHNGVSEGGSYGGEFHNVLTTPNVTEVFNSQFKMANQMAENNGVIHFPSFSMNNDEMYI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1197 236 SUPERFAMILY Homeodomain-like 10 70 IPR009057 -
Lele48g1197 236 SMART sant 14 67 IPR001005 -
Lele48g1197 236 Pfam Myb-like DNA-binding domain 15 65 IPR001005 -
Lele48g1197 236 PANTHER MYB DOMAIN PROTEIN 55 1 45 - -
Lele48g1197 236 Gene3D - 14 71 - -
Lele48g1197 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 69 IPR017930 -
Lele48g1197 236 MobiDBLite consensus disorder prediction 1 20 - -
Lele48g1197 236 MobiDBLite consensus disorder prediction 77 107 - -
Lele48g1197 236 CDD SANT 18 65 IPR001005 -
Lele48g1197 236 ProSiteProfiles Myb-like domain profile. 10 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1197 Lele-ChrLele48 16436415 16438544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1197 6 143 MYB Transcription Factor Family AT5G52260 32.178 2.28e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele48g1197 Myb_DNA-binding 3.5e-12 CL0123