Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1191 ATGAGAGGGGAAGAGCTCGAGAAGAAGAAGAAGGATCCCAATGCAACTTCGAACTTTCGGATATCGGAGCCCTTGCGGGCGAAGTTGAAGGAGAAAGGGATTGAATCTCTATTTCCCATTCAGGCCATGACTTTTGATACCATTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACGGGTCAGGGTAAAACATTGGCTTTTGTGTTGCCCATACTAGAGTCTTTAACCAATAGTCCTGCTAAAGAATCCAGAAAGACTGGCTATGGGAGGTCTCCAAGCGTCCTTGTGCTCTTGCCTACTAGAGAATTGGCCTCTCAGGTGTTCTCTGAATTTGAAGTTTATGGCGAGGCATTGGGTTTGGTTTCTTGCTGTTTGTATGGTGGAGCTCCATATCAAGCTCAAGAAATTAAGCTCAAGCGAGGTGTTGATATTGCTGTTGGAACACCGGGCCGCATAAAGGATCATATAGAGAGACAAAATATTGACCTAACTCAACTAAGGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTAAGGATGGGTTTTGTTGAAGATGTTGAATTCATTCTGGTTAAGAAAACTGTTGATCTCGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCGTGTACGAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGGTCCTATAGCAGTGGAGGCCGAACAATCGTATTTACTGAGACAAAGGAGTCAGCTTCTGAGCTTGCAGGGCTTTTGCCTGGAGCTCGAGCTCTACATGGTGACATACAACAAGCACAACGCGAGTGTGAACCACCACGTGATGTAGAAGACTATATTCATCGTTCTGGCCGCACAGGACGGGCAGGCAACACTGGAGTTGCAGTTATGCTTTATGATCCAAGAAGGTCAAATATATCTAAAATAGAAAGAGATTCAGGTGTGAAATTTGAACACATATCAGCTCCTCAGCCTGCTGATATTGCAAAAGCTGTTGGTGGGGATGCTGCTGAAATGATTAACCAAGTTGTTATTCCTGCATTCAAGTCTGTTGCTGAGGAGCTTTTGAAAAACTCTGGTTCAACAGCCGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGATAAAGAAAAGATCACTTCTTACTTCCATGGAGAATTATGTCACATTACTTCTTGAGATTGGAAGACCCATCTACACTCCATCTTTTGCATATGGAGTCCTCAGGAGATTTCTGCCTGAGGAGAAGGTTATGGCAGTGAAGGGTCTTACTCTGACTGCAGATGGAAATGGCTCTGTCTTTGATGTGCCAGCTGAAGATTTAGATACATACGGTCAGGAAAATGCTGCTAATATAAGCTTAGAAGTATTAGAGGTATTGCCACGTTTGCAAGAAAGAGACCAATCAAGAGGGGGCAGATTTGGTGGCGGCGGCGGTCGTGGTGGGTTTGGAAACAGATTTTCTGGTGGAAGAGGAGGTGGCCGAAATGGTGGTTTCTCGAATCAGAGAAATAATCAGTTTTCCGGTGGTTCTAATGGCGGGAGAGGCGGTGGCCGTAGCGTGTCAGTTATTATGGTTGTCCGCCTAGAGTTCAAAACGGTCGAACCCAGAAGTCTGAAGAACTCCCTCTCAAAATTAATTGAAGAATGCAAGAATTTCAGAGAGGTCAAACAAATCCATACCCAGATTCTTAAGTCCCCATTATTACTTACCGAAGACCAATATTATCTCATTACTCGTCTCCTCTTCTTTTGTGCTTTTTCGAATTGGGGTTCATTCACTTATGCTTCCAATGTTTTCCGGACGCTAAAGAACCCGGAAATTCGTGCATACAATATCATGCTTAGATCATACGCGGGTTTGAAGGATGGTGGTGAAGATAGCCACATCTGCAGGGCCTTATCGCTTTATAGAGAAATGCTTCGCAATGGCATTTTACCAAATAACCTCACTTTCCCATTCCTTTTAAAGGATTGCACAAGGAGTCTGGATGAAGTTACTGGCGTAGGAATTCATGCCCAAGTCGTCAAGTTTGGATTTTATGATGATATTTTTGTTGGGAATTCCTTGATAAACTGGTACATGTCATGTAGGTTGTTAAGTAATGCCAGGAAGCTGTTTGATGAAATGCGAGTGAGAGATATTGTAACCTGGAACTCAATGATTATTGGGTTTCTGAGAAATGGAGAGCTTGACAATGCAGTGGAATTGTTCACGCGGATGAGTGAGAAGAAGAATATCATAACTTGGAACTCAATTATTACAGGGTTGGTTCAAGGTGGCAGACCCAAAGAGTCACTGCAACTTTTTCATCAAATGCACGTTTCCAGAGAAGAAGATAACACGGTTGAGCCTGATAAATTTACAATTGCTAGTGTCCTTTCAGCTTGTGCTCAACTCGGGTCTATCGATCATGGGAAATGGGTTCATAGTTATCTGAGAAGAAGTGGGCTAGAATGTGATGTGGTAATTGGAACATCACTTGTGAATATGTATGGTAAGTGTGGGAATGCAGATCAAGCAGTTGAGATCTTCAAAGAAATGCCAGCTGAGATTAAGGATGCTTCTATATGGACGGCGATGATTTCGGTGCTGGCTCTTCACGGCTCAGGCGAGAAGGCTTTCGATTGCTTTCTAGAGATGGAAAAAGCTGGAGTGAAGCCAAACCATGTAACTTTCGTGGGCTTATTGTCTGCTTGTGCTCATTCTGGTTTGGTAAAGAAAGGTCGGTGGTGCTTTAACATGATGAAAAATGTTTACTCAATTGAACCTCGGGTTTATCACTATGCTTGCATGGTTGACATTCTTAGCCGAGCCAAGCTTTTCGAGGAAGCAGAGAAACTAATAAGAGAGATGCCAATGAAGCCTGATGTTTATGTGTGGGGTTCATTGCTTGGAGGTTGTCAGATGCATGGGAATATAGAGCTAGGAGAAAAGGTAGCCATTCATTTGATTAACTTAGAGCCTCATAATCATGCTTTCTATATGAACTTGTGTAACATATATGCCAAAGCTGGCCAGTTTGATGCTGCTAAAAGAGTTAGAAATCTAATGAAAGAAAGAGGAATCCAAAAGGAAATCCCAGGTTGTAGCATGATTGAAATATGTGGGGTGGTTCATGAATTTTCTGCAGGAGTTTCACTGAATCTTCCATTGGAAATTGTTTGTGTCTTAAATGAGTTAAATAATCAGATGAAGTTACCAGGATGTGCTAGCAGTAAGATTGCTGCAAACAGGGACAAGTTTGATCATGCGAAGACACTTGCTTCCGCACGTTTGATTGGTGTTCGGTGTCTAACCGACCTTGTATTCTGGGTAAAAAATCAGCTTCAGCGACCGACAGCGTTGGTTATTGATTACAAGTGTCTTAATATCTTACTTTGTAGTTTCATTTCTGCAATGGATCATTATCTCTTTGGTATGAGCCCTCTGCTTTTAGCCCTGGTGACTCTCTGTTTCGCTGCTGCTGCAATCAAAATCCATGGCACTAGATTTTCTGACAAGAGAAGAAGATACCACCCGGTTTCTGGCACTGTTTTGGACCATCTTTTAAACTTCCCCAGGCTGCTGGATTTCATCGTTGAGCTCACAAGACACAGGAAAACTTACAGGATGCTTAGCTTCTTGAGAGCTGAGGTTTACACTGCAGATCCAGCTAATATTGAGCACTTTCTCTCTGGAAACTTCTCAAACTACGGCAAGGGTTGGTACCACCATAGTGTTTTGAGCGATCTTCTGGGTGATGGTATATTCACAGTGGATGGAGTGAAGTGGAAACATCAGAGGAAGGCTGCAAGCTATCAATTCTCCACCAGGTTATTGAAAGACTTCAGCAGTTCAGTGTTTAGAACCAATGCAGTAAAGCTTGTAGGGATAGTCTCAGAAGCTGCAACTTCAAACAACACCATTGAGCTGCAAGATTTGTTCATGAAGTCAGCTTTAGATTCAGTATTTAAGGTTGTGCTTGGTGTAGATCTAGACACCATGTGTGGAACCTATGAAGATGGTAGTCGGTTCTCCAATGCTTTTGATGAAGCAAGTGCAATTACCTCATATAGATATGTCGATTTTTTCTGGAAGATCAAGCGACTCCTGAACATTGGATCAGAAGCAGTACTTAGAAACAACATAAGAGTAGTAGACCGGTTTGTGTATAAAGTAATCAGAACCAAGATTCATCAAGTCCAAAACCAACAAGATGATTCGCATGTGGTGAATGGTGATATGCTGTCAAGGTTTATAAAACTGAATGAGACCGATCCAAAATATCTTAGAGACATCATCCTGAGTTTCATCATTGCTGGGAAAGACACGACAGGAGGCACTCTTTCCTGGTTTGTTTACCTGCTCTGCAAGCATCCCCATATACAGGAAAAGATTGCACAAGAAATCTGGGAGTCAACAAAAGTACAAGGAGGCGGCGTAACCGCTGAAGAACTCGCAACTAGAGTAACTGAAGATGCCCTTGAAAAAATGCAGTATCTGCACGCAGCTCTAACCGAAACACTAAGGCTCTACCCAGCAATTCCACTGGAAGGGAAGTACTGTTTTTCAGATGACATATTGCCAGATGGATTTAATGTAAGGAAAGGAGATCTAATGGTGTTCTGCCCTTATGCCATGGGAAGGATGAAGTACTTATGGGGTGATGATGCTGAGTTATTTAAGCCAGAGAGATGGTTTGATGATAACGGAGTTTTCCAGCAAGAAAGCCCTTTCAAGCTCACTGCCTTCCAGGCAGGACCGAGACTTTGCCTGGGAAAGGAGTTTGCATACAGACAGATGAAAATATTTTCTGCAGTTCTTTTGGGTTGCTTCAAACTGAAACTGGCAGATGAAAAGCAATCAGCAAAACACATGGCCATACTTACTTTACAAATTGATGGTGGTCTTCATGTGCTTGCTTCTCACAGATTATAA 4944 0.428 MRGEELEKKKKDPNATSNFRISEPLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNSPAKESRKTGYGRSPSVLVLLPTRELASQVFSEFEVYGEALGLVSCCLYGGAPYQAQEIKLKRGVDIAVGTPGRIKDHIERQNIDLTQLRFRVLDEADEMLRMGFVEDVEFILVKKTVDLVGNEKMKASTNVRHIVLPCTSSARSQLIPDIIRSYSSGGRTIVFTETKESASELAGLLPGARALHGDIQQAQRECEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERDSGVKFEHISAPQPADIAKAVGGDAAEMINQVVIPAFKSVAEELLKNSGSTAVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGRPIYTPSFAYGVLRRFLPEEKVMAVKGLTLTADGNGSVFDVPAEDLDTYGQENAANISLEVLEVLPRLQERDQSRGGRFGGGGGRGGFGNRFSGGRGGGRNGGFSNQRNNQFSGGSNGGRGGGRSVSVIMVVRLEFKTVEPRSLKNSLSKLIEECKNFREVKQIHTQILKSPLLLTEDQYYLITRLLFFCAFSNWGSFTYASNVFRTLKNPEIRAYNIMLRSYAGLKDGGEDSHICRALSLYREMLRNGILPNNLTFPFLLKDCTRSLDEVTGVGIHAQVVKFGFYDDIFVGNSLINWYMSCRLLSNARKLFDEMRVRDIVTWNSMIIGFLRNGELDNAVELFTRMSEKKNIITWNSIITGLVQGGRPKESLQLFHQMHVSREEDNTVEPDKFTIASVLSACAQLGSIDHGKWVHSYLRRSGLECDVVIGTSLVNMYGKCGNADQAVEIFKEMPAEIKDASIWTAMISVLALHGSGEKAFDCFLEMEKAGVKPNHVTFVGLLSACAHSGLVKKGRWCFNMMKNVYSIEPRVYHYACMVDILSRAKLFEEAEKLIREMPMKPDVYVWGSLLGGCQMHGNIELGEKVAIHLINLEPHNHAFYMNLCNIYAKAGQFDAAKRVRNLMKERGIQKEIPGCSMIEICGVVHEFSAGVSLNLPLEIVCVLNELNNQMKLPGCASSKIAANRDKFDHAKTLASARLIGVRCLTDLVFWVKNQLQRPTALVIDYKCLNILLCSFISAMDHYLFGMSPLLLALVTLCFAAAAIKIHGTRFSDKRRRYHPVSGTVLDHLLNFPRLLDFIVELTRHRKTYRMLSFLRAEVYTADPANIEHFLSGNFSNYGKGWYHHSVLSDLLGDGIFTVDGVKWKHQRKAASYQFSTRLLKDFSSSVFRTNAVKLVGIVSEAATSNNTIELQDLFMKSALDSVFKVVLGVDLDTMCGTYEDGSRFSNAFDEASAITSYRYVDFFWKIKRLLNIGSEAVLRNNIRVVDRFVYKVIRTKIHQVQNQQDDSHVVNGDMLSRFIKLNETDPKYLRDIILSFIIAGKDTTGGTLSWFVYLLCKHPHIQEKIAQEIWESTKVQGGGVTAEELATRVTEDALEKMQYLHAALTETLRLYPAIPLEGKYCFSDDILPDGFNVRKGDLMVFCPYAMGRMKYLWGDDAELFKPERWFDDNGVFQQESPFKLTAFQAGPRLCLGKEFAYRQMKIFSAVLLGCFKLKLADEKQSAKHMAILTLQIDGGLHVLASHRL 1647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1191 1647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 862 896 IPR002885 -
Lele48g1191 1647 CDD GUCT_RH7_like 386 469 - -
Lele48g1191 1647 Pfam PPR repeat 696 722 IPR002885 -
Lele48g1191 1647 Pfam PPR repeat 936 961 IPR002885 -
Lele48g1191 1647 Pfam PPR repeat 724 752 IPR002885 -
Lele48g1191 1647 Pfam PPR repeat 756 782 IPR002885 -
Lele48g1191 1647 Pfam PPR repeat 834 857 IPR002885 -
Lele48g1191 1647 Pfam Cytochrome P450 1221 1625 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 Gene3D - 274 397 IPR027417 -
Lele48g1191 1647 Pfam PPR repeat family 862 909 IPR002885 -
Lele48g1191 1647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 305 IPR027417 -
Lele48g1191 1647 Gene3D - 398 466 - -
Lele48g1191 1647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 829 859 IPR002885 -
Lele48g1191 1647 MobiDBLite consensus disorder prediction 476 523 - -
Lele48g1191 1647 CDD DEADc 25 191 - -
Lele48g1191 1647 Gene3D Tetratricopeptide repeat domain 811 915 IPR011990 GO:0005515
Lele48g1191 1647 Gene3D Tetratricopeptide repeat domain 539 677 IPR011990 GO:0005515
Lele48g1191 1647 Gene3D Tetratricopeptide repeat domain 693 810 IPR011990 GO:0005515
Lele48g1191 1647 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 543 1077 - -
Lele48g1191 1647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 754 788 IPR002885 -
Lele48g1191 1647 Gene3D - 16 212 IPR027417 -
Lele48g1191 1647 SUPERFAMILY RNA-binding domain, RBD 383 454 IPR035979 GO:0003676
Lele48g1191 1647 Gene3D Tetratricopeptide repeat domain 916 1052 IPR011990 GO:0005515
Lele48g1191 1647 SMART ultradead3 33 225 IPR014001 -
Lele48g1191 1647 Gene3D - 213 273 IPR027417 -
Lele48g1191 1647 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 171 179 IPR000629 -
Lele48g1191 1647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 999 1033 IPR002885 -
Lele48g1191 1647 FunFam Pentatricopeptide repeat-containing protein chloroplastic 678 829 - -
Lele48g1191 1647 FunFam Pentatricopeptide repeat-containing protein 833 1051 - -
Lele48g1191 1647 Pfam E motif 979 1042 IPR046848 -
Lele48g1191 1647 Pfam DEAD/DEAH box helicase 38 191 IPR011545 GO:0003676|GO:0005524
Lele48g1191 1647 PRINTS E-class P450 group I signature 1504 1522 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 PRINTS E-class P450 group I signature 1451 1477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 PRINTS E-class P450 group I signature 1583 1593 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 PRINTS E-class P450 group I signature 1431 1448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 PRINTS E-class P450 group I signature 1593 1616 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 264 IPR014001 -
Lele48g1191 1647 SUPERFAMILY Cytochrome P450 1180 1646 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 PRINTS P450 superfamily signature 1584 1593 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 PRINTS P450 superfamily signature 1505 1516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 PRINTS P450 superfamily signature 1593 1604 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 PRINTS P450 superfamily signature 1442 1459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 722 752 IPR002885 -
Lele48g1191 1647 Pfam GUCT (NUC152) domain 379 472 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lele48g1191 1647 MobiDBLite consensus disorder prediction 503 523 - -
Lele48g1191 1647 Gene3D Cytochrome P450 1182 1645 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele48g1191 1647 TIGRFAM PPR: pentatricopeptide repeat domain 865 897 IPR002885 -
Lele48g1191 1647 TIGRFAM PPR: pentatricopeptide repeat domain 756 784 IPR002885 -
Lele48g1191 1647 TIGRFAM PPR: pentatricopeptide repeat domain 724 753 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1191 Lele-ChrLele48 16401251 16410632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1191 1156 1646 Cytochrome P450 AT2G45510 50.202 2.49e-160 495