Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1185 ATGATAAGTGGAGCTCTGTCCCCAGACATATGTCAGTTAACTGGACTGTGGGACTTGAGTGAGAATGAACTGGTAGGGCCCATCCTTCCTGTACTTGGCAATTCATCTTTCACAGGCAAGTTGTATCTCCATGGAAACAAGCTCACTGTTTCAATACCTCCTGAATTTGGCAACATGTCTAAGCTGAGCTACCTGCAATTGAGTGGCAATAAACTAGTTGGCAGAATTCCTGAGGAACTTGGAAAGCTTGAGCATTTGTTTGAATTGAATCTTGCTAACAATTATCTTGAAGGATCTATTCCACATAACATAAGCTCCTGTACTTCCTTGAATAAGTTTAATGTGCATGGTAATCGCCTAAGTGGTTCTGTTCCTTTGAGCTTCCGCAGGCTTGGGAGTCTGACTTACTTGGCAGGTTCCAGCACTGTTGGTTATCTGGAACATCTTCTGACACTTAACTTGAGCCATAACTATTTTACTGGTCCCTTGTCTGCTGAGTTTGGGAATCTGAAAAGAATCCAGATTATTGATATGTCTTTCAACAATCTATCTGGTAGCATTCCTCATGAAATTGGGCTGCTGCAGAACCTTGTTTCACTTGCAGTGACTTTTTCCAGGGCTGCAATTGTTTGTCTTACTCTTGGGATCCTTACATTGTTGGCCATGGTCATAGTTGCTATGTGCAGATTGAGCCAATCCATGCTATTGACGAAGAGATCCAGAGGAACTGGGCATGGCATGTGTCCCTTTAAGAAGGTAACACTTGACTGGGAAACACGCCTAAGAATTGCCGTGGGAGCAGTTCAGGGACTTGCTTATCTCGACCATGGCTGCAACCCTCGAATTATTCACAGGGATATCAATATCAAGTCTTCAAATATTCTACTGGATGAGAACTATGTGGCTCATCTCTCTGATTTTGGCATTGCCAAATGTGTCTCAACCACAATAACTTATGCATCAACGCATATACAGCCCAAGACAGATAACGACACTGTAATGGAGGCTGTGGATCCAGAAGTTTCTGTTACCTGCATAAATCAAGCCCATGTGAGGAAGACATTTCAGCTTGCACTGCTTTGTACTAAAGGAAATCCATCTGAGAGGCCTACCATGCATGAGGTTGCCAAGTTTTTGGTCTCACTTCTCCCTGCACCTCCCAGTAAGAAGACATTTGCCTCACCTGCAAAGACTATCCACTATGCTCGATAG 1212 0.4356 MISGALSPDICQLTGLWDLSENELVGPILPVLGNSSFTGKLYLHGNKLTVSIPPEFGNMSKLSYLQLSGNKLVGRIPEELGKLEHLFELNLANNYLEGSIPHNISSCTSLNKFNVHGNRLSGSVPLSFRRLGSLTYLAGSSTVGYLEHLLTLNLSHNYFTGPLSAEFGNLKRIQIIDMSFNNLSGSIPHEIGLLQNLVSLAVTFSRAAIVCLTLGILTLLAMVIVAMCRLSQSMLLTKRSRGTGHGMCPFKKVTLDWETRLRIAVGAVQGLAYLDHGCNPRIIHRDINIKSSNILLDENYVAHLSDFGIAKCVSTTITYASTHIQPKTDNDTVMEAVDPEVSVTCINQAHVRKTFQLALLCTKGNPSERPTMHEVAKFLVSLLPAPPSKKTFASPAKTIHYAR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1185 403 SMART tyrkin_6 152 379 IPR020635 GO:0004713|GO:0006468
Lele48g1185 403 ProSiteProfiles Protein kinase domain profile. 132 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g1185 403 Gene3D Transferase(Phosphotransferase) domain 1 322 390 - -
Lele48g1185 403 Gene3D Transferase(Phosphotransferase) domain 1 245 321 - -
Lele48g1185 403 PANTHER OS04G0122200 PROTEIN 255 324 - -
Lele48g1185 403 SUPERFAMILY Protein kinase-like (PK-like) 251 389 IPR011009 -
Lele48g1185 403 Pfam Leucine rich repeat 40 96 IPR001611 GO:0005515
Lele48g1185 403 Gene3D Ribonuclease Inhibitor 1 208 IPR032675 -
Lele48g1185 403 FunFam Leucine-rich repeat receptor protein kinase EMS1 52 142 - -
Lele48g1185 403 SUPERFAMILY L domain-like 18 230 - -
Lele48g1185 403 Pfam Protein kinase domain 258 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1185 Lele-ChrLele48 16359469 16363535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1185 245 383 Receptor kinase-like Gene Family AT5G07180 52.381 1.12e-48 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Lele48g1185 Pkinase 5.1e-08 CL0016