Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1176 ATGGAGGAAAAGGAGAGTTTTGGTTCTGGGCTTCTGCAGAAGGATAACGATGCCCCGGACAGTTTTCACATAGCTTCGAGGAATGAAAACTCCGGTCATTTCACCGGCGGGACCGAAGCTGCGGGTCCGGCACCTGTAAGTGCTCCGACGACGGTGACGGGGACGGGGACTCCTGGTACAGAAGTTAAGAAGAAGAGAGGGAGGCCAAGGAAGTATGCTCCCGATGGCTCAATGGCGTTGGCTTTGTCCCCGATGCCGATTTCGTCTTCAATTCCGTTGACCGGTGACTTCTCCGGTTGGAAGCGGGGCAGAGGGCGGTCTGTTGAATCGTCAAAGAAGTCGTTTAATAAGTATGAGTTCGAAAGTTCAGGACCAGGTAATGGACTTGCATACTCAGTTGGTGCCAATTTTACACCCCATATACTCACTGTTAATGCTGGCGAGGATGTCACCATGAAGGTTATGTCCTTCGCTCAACAAGGATCCCGTGCCATTTGCATTCTTTCTGCAAATGGCATGATTTCAAATGTAGCACTTCGACAACCAACTTCCTCTGGTGGTACTTTAACTTATGAGGGACGATTTGAGATTCTTTCTTTGTCTGGTTCATTTATGCCAACTGAGAATGGAGTGACAAGGAGCAGATCTGGTGGAATGAGTGTGTCTTTGGTAGGTCCAGATGGTCGAGTCGTTGGGGGTGGACTCGCTGGTCTATTAGTTGCTGCAGGCCCTGTGCAGGTTGTCGTGGGCAGTTTCCTTCCAGGTCACAAGCAGGAACACAAACACAAGAAGCAGAAGGTGGATTACATATCTATGGTCACGCCTCCCCATTTTAGTCCTGTCTCTGATCAAGAATTGCATGTTAGTTTTGGAGGAGTAAAGCCTATTCTAACACCTGTGGCTTTTCAAGGACACAGTGCTGCTTGTTTTAACAACGTTCAAGGCTCCAGGGACTCGTCGACCGATAATAGATCGCCCTTGCCTGAGAAGGAGTCCAATACCAGCCACCTATCAAGCGCTGGGATTCCTGCTTAA 1035 0.4937 MEEKESFGSGLLQKDNDAPDSFHIASRNENSGHFTGGTEAAGPAPVSAPTTVTGTGTPGTEVKKKRGRPRKYAPDGSMALALSPMPISSSIPLTGDFSGWKRGRGRSVESSKKSFNKYEFESSGPGNGLAYSVGANFTPHILTVNAGEDVTMKVMSFAQQGSRAICILSANGMISNVALRQPTSSGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLVGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHKQEHKHKKQKVDYISMVTPPHFSPVSDQELHVSFGGVKPILTPVAFQGHSAACFNNVQGSRDSSTDNRSPLPEKESNTSHLSSAGIPA 344
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1176 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Lele48g1176 344 MobiDBLite consensus disorder prediction 1 78 - -
Lele48g1176 344 FunFam AT-hook motif nuclear-localized protein 1-like 139 269 - -
Lele48g1176 344 ProSiteProfiles PPC domain profile profile. 134 275 IPR005175 -
Lele48g1176 344 MobiDBLite consensus disorder prediction 312 344 - -
Lele48g1176 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 264 - -
Lele48g1176 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 323 IPR039605 GO:0003680
Lele48g1176 344 CDD DUF296 138 252 IPR005175 -
Lele48g1176 344 Gene3D - 139 273 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele48g1176 Lele-ChrLele48 16288715 16292023 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1176 40 260 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 63.436 2.56e-90 274