Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1175 ATGTTGCGCTTTTTACTGCGGCTTCTGGAGTATCTGCTTTGTTATCCTTTGTATTGCGTAGTCAATGAACATGCCAATTGCATTGAAGTGAAACCTGGAAAACCATATCCTTATCACGCGGACAATGTGCAAGGGAAGCTTCACGTAACTCAGGCAACCTTGGGCCTTGGCTCATCAACTGAGAAAAGCATTCTCCAATGTTCTGCTGGACATAAAAATCCAGTCTTTTTGTGCTCATTGCTGCCAAATAGTACTGAGTCATGCCCTTTGAATCTTGAGTTTGATGAAGATGATTTGGTGGCCTTCTCAGTAATTGGTCCACGAAGTATCCATCTCTCTGGGTTTTTTGAGGCTGCTGATGGGGATGAACTTAGGGATGACTATGAGTATGATTCTTTTGGAGAGGATGTTGCTGATACAGACACAGATGAGTCTTCTGAATACAACACTGAAGATGAATATGCAGATGGCTTCATTGATGATAGTGATATTGACAGTTATGCACCTTCACCTATCCCAAATAGTGGAGTTGTAATTGAGGAAATAGTAGATGATGATAAGCCTGAAAGTGGAGATAATACTTCCAAGAAGTCGAAGAAAAAGGTTCAAATGCCCAACTCTAAGGACGGCAAAAATTCTCAGCAGCAAATTGTTGTCAGAGGCGATAAGAGTGTCCCTGTTTTGGAAAGTGAAGATGAAGATGGTTTTCCAATTTCTGCTTCTCCGAAGGCAGAAGCAAAAGAAGAAAAGACGCATAAGAGAACTGAGAAAGCCAATAAAAAGAAAGTGAAAGATGATGATCATGCTGCCACATTGAAACGAAAAGTTGAAGGTGCTGACAAAGATGAGCATCAAGAAGGGAAAAAGACAAAGAAAAAGAAGTTGAAAGAACAAGGTAAAGGGGACAGTGCCAAAGTATCTGATGATAGCAATGAGACTCATGATGCTAATGCAGATGGTAAACATCCTGAGGAGGTGAAAATAACACCGAGCCTTGATCATGTTTCTCATGCTGAGGTTGAGTATGAAGGAAATGTATCAAACGAAAAAATTCTTGATGAGAAGAAAAAGAAGAAGAAGAAGAAGAAGACTAAGGATGAAGGGGTAACTAATGCGGATCAAACTTCCACAGATACGGGAAATCAGAATATAACCACTTTTGAGAGAGGAGAGGAGGAAAAAGAAGCCAAGCCATCTCAAATAAGAACCTTCCCAAATGGGTTAGTTGTTGAGGAACTATCCATGGGTAAACCGGATGGCAAAAGAGCTACCGCCGGAAAACAGGTCAGTGTTAGATACATTGGCAAACTACAGAAAAATGGGAAAATATTTGACTCGAATATCGGAAGAGCGCCCTTTAAATTTCGCCTTGGTATGAGAATTGGGGACAAAAGAAGAATCACAATTCCACCATCAATGGGTTATGGAGATAAACGTGCTGGGAGCATACCTCCAAATTCTTGGCTTGTATTTGATGTTGAGTTGATCGATGTTCGCTGA 1500 0.408 MLRFLLRLLEYLLCYPLYCVVNEHANCIEVKPGKPYPYHADNVQGKLHVTQATLGLGSSTEKSILQCSAGHKNPVFLCSLLPNSTESCPLNLEFDEDDLVAFSVIGPRSIHLSGFFEAADGDELRDDYEYDSFGEDVADTDTDESSEYNTEDEYADGFIDDSDIDSYAPSPIPNSGVVIEEIVDDDKPESGDNTSKKSKKKVQMPNSKDGKNSQQQIVVRGDKSVPVLESEDEDGFPISASPKAEAKEEKTHKRTEKANKKKVKDDDHAATLKRKVEGADKDEHQEGKKTKKKKLKEQGKGDSAKVSDDSNETHDANADGKHPEEVKITPSLDHVSHAEVEYEGNVSNEKILDEKKKKKKKKKTKDEGVTNADQTSTDTGNQNITTFERGEEEKEAKPSQIRTFPNGLVVEELSMGKPDGKRATAGKQVSVRYIGKLQKNGKIFDSNIGRAPFKFRLGMRIGDKRRITIPPSMGYGDKRAGSIPPNSWLVFDVELIDVR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1175 499 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 63 498 - -
Lele48g1175 499 Pfam Nucleoplasmin-like domain 28 116 IPR041232 -
Lele48g1175 499 MobiDBLite consensus disorder prediction 243 354 - -
Lele48g1175 499 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 421 496 IPR001179 GO:0003755
Lele48g1175 499 MobiDBLite consensus disorder prediction 183 400 - -
Lele48g1175 499 Gene3D - 343 499 IPR046357 GO:0003755
Lele48g1175 499 MobiDBLite consensus disorder prediction 183 206 - -
Lele48g1175 499 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 426 499 IPR001179 GO:0003755
Lele48g1175 499 MobiDBLite consensus disorder prediction 370 386 - -
Lele48g1175 499 Gene3D Nucleoplasmin core domain 22 122 - -
Lele48g1175 499 SUPERFAMILY FKBP-like 331 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1175 Lele-ChrLele48 16281522 16287487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1175 426 499 Calmodulin-binding Proteins AT5G48570 41.111 1.49e-08 55.5