LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g1170	ATGGGGTTTTCTCTTTCACCACTTACTCTCATCTTCTCTCTCCTAGTCTTTGCTCTGTTGAACCCAAAATGGGTATGTGGGGCTGCAGAGCTAAGAGCACTTATGGATATCAAAGCCGCTTTGGACCCAGAAAGCCATTTTCTTTCCTCGTGGACTATTAAGGGAAAACTGTGTGATGGTTCTTCGTTCGAAGGAGTGAGTTGTAACGAGAAGGGTCAAGTGGCTAACATTTCATTGCAGGGAAAAGGTCTCTCAGGGAATCTTTCACCCGCCATTGCAGAGCTCAAGCAACTTACAGGACTTTACTTGCATTATAACTCCTTGCAGGGAGCCATTCCAAGAGAAATTGCCAACTTGACTAACCTAAGTGACTTGTATTTGAATGTGAATAATCTCTCTGGTGAAATCCCTCCCGAGATAGGCAAAATGGAGAACCTGCAAGTTTTGCAGCTTTGCTATAATCAGTTTACAGGAAGCATACCAACACAGCTTGGTGCACTGAAGAAGCTTGTAGTTCTTGCTCTGCAGTCAAATCAATTAGCTGGTGCCATCCCTGCAAGTTTAGGTGATTTGGGAATGTTAATGAGGCTCGATCTAAGCTCTAATCACCTCTTCGGTTCGATTCCCTCTACTTTAGCCGGTTCTCCTTCCCTTCGAGTTCTAGATGTTCGCAACAACACCCTATCTGGAAATGTACCTCCTGCTCTGAAGAGGCTAGATGATGGATTTTTGTACGAGTACAATCTGGGATTATGTGGAGTCGGGTTTTCATCCTTGAAAACTTGCAATGATTCAGATCATACTAATCCTGATAGACCTAATAAACCTTATGGAATCAGTTTTGGCAGTACATCGGCAAAAGATATACCGGAAACTGCGAATGTGCCACTTCCTTGCAATGGAACTCAGTGCCAAAACTCGTCAAAACCCAAACAATCAGCATCTATCGTTGTTGGCATAGTTGTGTTTGCAATTGTAGTGCCAACAATTGGCGTTCTAACTTTCACACAATACCGTAGGCGAAAACAAAAGCTTAGGAACTCGTTTGATATCTCGGATAACAGTCTAATCACGATGAACCAAGCCAAGGGTACATACCAGAAAAATGGATCTCCTTTGGCCAGCCTTGAGTACTCTAGTGGCTGGGACCCTTTAGCAGAAAGCCGGAATTTCATGGGGAATGATAGCCATGATGATGTGTTCCATAGTTTCAGGTTCAACTTGGAAGAGGTTGAGACTGCTACTCAGTATTTCTCGGAGTCGAACTTATTGGGTAAGAGTATCTTCAGTGCGACGTATAAGGGAATGTTAAGAGATGGATCTGTTGTTGCCATTAAAAGAATCAGTAAAACAAGCTGCAAGAGTGATGAGTCTGAGTTTTTGAAGGGACTACACATTTTGACATCACTGAGGAATGAGAATTTAGTGAGGTTGAGAGGATTTTGTTGCTCGAGGGGGCGAGGCGAGTGCTTTCTGGTTTATGATTTCGTTCATAATGGAAATCTTTCGTGCTACCTCGATGTCAATGAAGGCGAAGGCGAAGTCCTTGAATGGTCTACTAGAGTTTCTATTGTTAAAGGCATTGCTAAAGGAATAGCATATTTGCATGCGTACGAGCCAAGCAAGCCAGCCCTTGTTCACCAAAACATCTCGGCTGAGAAAGTGCTCATTGATCAGCGATTCAACCCGATGCTTTCGGATTCTGGCCTTCACAATCTTCTTACTGATGACATTGTCTTCTCAGCACTGAAAGCTAGTGCAGCAAAGGGTTATCTAGCTCCTGAATACACGACCACCGGGAGGTTCACGGAAAAAAGCGATGTGTATGCTTTTGGAGTGCTTCTTTTCCAGATCCTCTCGGGGAAAAGGAAGATCACTAGCTCGATTCGCCTCGCTGAAGAATCCTCCAGACTCGAAGAACTCATTGACCCGAATCTCCATGGCAGATTCGTTGAATACGAGGCTGCAAAGCTCGCGAAGATGGCTTTGCTTTGCTCCCACGAGTCTCCTTTTGAGAGGCCACTGATGGAAGCCATTGTTTTAGAACTTGCAAGTTTCAATATTTGTCTCTGA	2073	0.4414	MGFSLSPLTLIFSLLVFALLNPKWVCGAAELRALMDIKAALDPESHFLSSWTIKGKLCDGSSFEGVSCNEKGQVANISLQGKGLSGNLSPAIAELKQLTGLYLHYNSLQGAIPREIANLTNLSDLYLNVNNLSGEIPPEIGKMENLQVLQLCYNQFTGSIPTQLGALKKLVVLALQSNQLAGAIPASLGDLGMLMRLDLSSNHLFGSIPSTLAGSPSLRVLDVRNNTLSGNVPPALKRLDDGFLYEYNLGLCGVGFSSLKTCNDSDHTNPDRPNKPYGISFGSTSAKDIPETANVPLPCNGTQCQNSSKPKQSASIVVGIVVFAIVVPTIGVLTFTQYRRRKQKLRNSFDISDNSLITMNQAKGTYQKNGSPLASLEYSSGWDPLAESRNFMGNDSHDDVFHSFRFNLEEVETATQYFSESNLLGKSIFSATYKGMLRDGSVVAIKRISKTSCKSDESEFLKGLHILTSLRNENLVRLRGFCCSRGRGECFLVYDFVHNGNLSCYLDVNEGEGEVLEWSTRVSIVKGIAKGIAYLHAYEPSKPALVHQNISAEKVLIDQRFNPMLSDSGLHNLLTDDIVFSALKASAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQILSGKRKITSSIRLAEESSRLEELIDPNLHGRFVEYEAAKLAKMALLCSHESPFERPLMEAIVLELASFNICL	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g1170	690	FunFam	Protein NSP-INTERACTING KINASE 2	497	687	-	-
	Lele48g1170	690	Pfam	Leucine rich repeat N-terminal domain	29	69	IPR013210	-
	Lele48g1170	690	ProSiteProfiles	Protein kinase domain profile.	418	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g1170	690	SUPERFAMILY	Protein kinase-like (PK-like)	400	683	IPR011009	-
	Lele48g1170	690	Gene3D	Ribonuclease Inhibitor	144	262	IPR032675	-
	Lele48g1170	690	SUPERFAMILY	L domain-like	26	238	-	-
	Lele48g1170	690	Gene3D	Phosphorylase Kinase; domain 1	388	496	-	-
	Lele48g1170	690	Gene3D	Transferase(Phosphotransferase) domain 1	497	688	-	-
	Lele48g1170	690	FunFam	Protein NSP-INTERACTING KINASE 2	141	263	-	-
	Lele48g1170	690	Gene3D	Ribonuclease Inhibitor	29	143	IPR032675	-
	Lele48g1170	690	FunFam	Protein NSP-INTERACTING KINASE 2	388	496	-	-
	Lele48g1170	690	MobiDBLite	consensus disorder prediction	264	283	-	-
	Lele48g1170	690	FunFam	Leucine-rich repeat receptor-like kinase	29	139	-	-
	Lele48g1170	690	Pfam	Protein tyrosine and serine/threonine kinase	422	682	IPR001245	GO:0004672\|GO:0006468
	Lele48g1170	690	Pfam	Leucine rich repeat	169	228	IPR001611	GO:0005515
	Lele48g1170	690	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	78	684	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g1170	Lele-ChrLele48	16243364	16246201	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g1170	9	531	Miscellaneous Gene Families	AT4G22730	53.686	0.0	541

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IV	Lele48g1170		PK_Tyr_Ser-Thr	8.5e-35	CL0016