Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1152 ATGTTCTCACCGATCTCGCGCTCAGATTCACAATTCGTCAGCCTCTGCTCTCTCTCTCTCTCTCCTTTCTTCGGTTGTCTTTCACAGTTTCTTCCTAAAGTATCAAATTCAGCACCTGATTTCGGATTTGTCCCGTCAGATATCTTCCTCATATTTCCGCGGTTCAACGGTACTGCTATTCTGAAGCTTCGTTTTCATATCGGATCTATTGTAGGCAAATTATGCTTTGAGGGGATGAAGAAAGTCCCATATGTGGATACTGAGCTGGATCTTCTAGTGTATGTGGTAAAGACTGCTTCTGTGGATGCACCAGAGTTTTCAACTCAGGATGCTGTTTTCTACTTGCTCTTCAGGCTGCAAGTGTGGGAGCTCCTGTCTGAACAAGCCATTCCAGAGTCAACCTGTGAAGAAGATGAAACAGGTCGAGAGAAATGTGGTTCAGGAATTGTGGCAGATGAGGATATTGAACAAGGGGAGTTTGTGATAGAATATGTAGGAGAAGGTTTGTTCAGTTTGGTGCAGATCAGGATTGTCATTGTGGTGCTGTTACATGCAGGCGTTTATCAAAATGAAGGTTTGAATACAGATCATGTTCGAGGATGGTACTGTTCGTTTCTTGACATGTCAGAAGAAGACGGGGAATTTGTGAGACTGAGAATAGATCATTACAACCCAGCTGATTGCAGCTTTCTAGTCTTATTGTGCAAGTACGAATTGAATTTGCTTTCTCCCTGGCTGACTGTTAGAACAATGGGTTTTGACAAGCCTGTTTCCACCATTATGGTCCTGATTGGAGGGAAGCCACTGAAGCGGATGAAGACGAGAGTAACGGCTGATTTCTACGACTTCCTCACTTTTCCGTCCCCATCACTCTTCGTGGCAGATGAGTTATCCGGCGGACCCTTCCGGACGAACGTGCGCTCGTTCCTTTCGAAGCACGCGCTGCTCCCACCGCCGTCAGCACTGTTTCCTCACCTGCTGACGTGGCAGTTCCTTTTCCGAGTCGGAGACCAGACGGACGGACCGGACTCGACGCCGTCGGTGGTCTGTCTCGACGTCGTGGAAGAGGATGTGGCCAGATCTAGATCAGTCTACTGCGACCAGTGTCGAGTTGTTGGTTGGAGTGACCACCCAGTATGCAGGAAACGTTACCACTTTATAATCAAGGCTGACGGTAGCTCCATCGGTGGGTACCACAAGCCATGCATGTGCTGTGGAGATATCTTGCACTTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACGACCACTGATGATGTTGAAGACTGGGTGTATAACCAGTTAGAAAACACGACCCATCTTTTACATGGTGTTGTTCATGCAAATGGTTATGGGCATCTTCTTCGGGTTAATGGCAGGGAAGGGGGCTCGACAGTTCTTTCTGGCCGTCATATCATGAACTTCTGGGATCGTCTCTGCAAGTCACTTGGAGCCAGAGAAGTTAGTGTAATGGATGTTTCAAAGAAATATGGGCTGGAGTACCGCCTGATCCATGCTATTACAAAGGGGCATCCCTGGTATGGTGATTGGGGCTACCAATTTGGCAGTGGTAGCTATGGTCTCTCGCATGAAGCATATAAGTCTGCAGTTGAATGCCTTTCTAATCTACCATTGTCCCTATTCCTCTCTGAAGGACAGAGACCTGATTCTCGATTGCGGGACACAATCTCATATTACCAGTCTCTGTCTGAAACTGGGCTTGTAAATATAAAGGATCTCTTTTGTTTTCTGATTGGTTTGATTCACGATGCTCGCATGACAGTGTCAAGGTCTGATGATGTCACTTGCAAGAAGCACCGTTGTAATGCTGCAGGAGTGTCATGTTTCTCATCAACAAGTGACATTGAACGTGTGGAAGGAGCAATGCTCAGAGTGTTGCGTGCAGTGTCAGGATCCAATTGGGTGAGCTGGCGTACTCTTAAGGGTGCTGTCTGCAAAGTGGCCTCTCCAGAGCTTCTTGACTATTGTCTTGGAGAACTAGGAGGAAAAGCAATATTTGGCGGTATGGTTGTCAACACCCGATGCAATCCTGTTAATGGAGCTTTCGAGTACAGACTAGAGGCAGGGAACATCTTTTCCTATGGGACAACAGCAAGCAATAAATATTTGCGTTCTAAGTATCCATCTGAAGTGAATCTCCTGCACGACTTGAGATATTTATACGAGTATTTGCTTCATCCACATAAGATGCCAAGCTATGACTCTGAGGGTACAAGGATTGCAGCAATGAGCTCTGCTCAGAAACTTCTTGACTGCAAGCATTTTGTAAAAGATTATAGACCTGAGATGTTGCCAATAACAAGCTTGAATAGTATACGCCTCTCATGTCAGGTAGTAGTTGTTGATGAATCTGATGAAGCTTTCGCAAGTCCTCCCCCAGAATTAATTGTCCTGCCCTGGAATGCAACTGTGTCCGACCTCAAGACTGAAGCATCAAATTCTTTTCAAGATGTATATCTCATGTTTAAAAGATTTCAAGTTGATGAGCTTTTTGGCTGTAGCAGTGCAGATGATTCCACTTTGGTCAAACTCTTGAGAGGATCAACGGAATTGGTTCGTGTCAAGGGAAAATGCATTGGGAAGAATGTATTGAGCAAGTTCCAAAGGGAACGTGGACTTGAGAGGTGGACCGTTGATTGCAGCTGTGGGGCCAAAGATGATGATGGGGAGAGAATGTTGGCATGTGATGCTTGTGGGGTGTGGAGGCACACTAGGTGTTCTAATATTCATGATGCAGATCCTGTCCCTGTGAGATTTTTTTGCCCAATATGCCAAAATTTTGAGTTGAGGCCGAATTTAAGTGGACACTGA 2835 0.4586 MFSPISRSDSQFVSLCSLSLSPFFGCLSQFLPKVSNSAPDFGFVPSDIFLIFPRFNGTAILKLRFHIGSIVGKLCFEGMKKVPYVDTELDLLVYVVKTASVDAPEFSTQDAVFYLLFRLQVWELLSEQAIPESTCEEDETGREKCGSGIVADEDIEQGEFVIEYVGEGLFSLVQIRIVIVVLLHAGVYQNEGLNTDHVRGWYCSFLDMSEEDGEFVRLRIDHYNPADCSFLVLLCKYELNLLSPWLTVRTMGFDKPVSTIMVLIGGKPLKRMKTRVTADFYDFLTFPSPSLFVADELSGGPFRTNVRSFLSKHALLPPPSALFPHLLTWQFLFRVGDQTDGPDSTPSVVCLDVVEEDVARSRSVYCDQCRVVGWSDHPVCRKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYNQLENTTHLLHGVVHANGYGHLLRVNGREGGSTVLSGRHIMNFWDRLCKSLGAREVSVMDVSKKYGLEYRLIHAITKGHPWYGDWGYQFGSGSYGLSHEAYKSAVECLSNLPLSLFLSEGQRPDSRLRDTISYYQSLSETGLVNIKDLFCFLIGLIHDARMTVSRSDDVTCKKHRCNAAGVSCFSSTSDIERVEGAMLRVLRAVSGSNWVSWRTLKGAVCKVASPELLDYCLGELGGKAIFGGMVVNTRCNPVNGAFEYRLEAGNIFSYGTTASNKYLRSKYPSEVNLLHDLRYLYEYLLHPHKMPSYDSEGTRIAAMSSAQKLLDCKHFVKDYRPEMLPITSLNSIRLSCQVVVVDESDEAFASPPPELIVLPWNATVSDLKTEASNSFQDVYLMFKRFQVDELFGCSSADDSTLVKLLRGSTELVRVKGKCIGKNVLSKFQRERGLERWTVDCSCGAKDDDGERMLACDACGVWRHTRCSNIHDADPVPVRFFCPICQNFELRPNLSGH 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1152 944 ProSitePatterns Uncharacterized protein family UPF0054 signature. 444 454 IPR020549 -
Lele48g1152 944 Pfam PHD-finger 888 934 IPR019787 -
Lele48g1152 944 SUPERFAMILY FYVE/PHD zinc finger 875 934 IPR011011 -
Lele48g1152 944 SMART PHD_3 887 933 IPR001965 -
Lele48g1152 944 SUPERFAMILY SET domain 143 169 IPR046341 -
Lele48g1152 944 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 275 936 - -
Lele48g1152 944 CDD PHD_MMD1_like 887 932 - -
Lele48g1152 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 872 936 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1152 Lele-ChrLele48 16136351 16149121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1152 298 932 PHD Transcription Factor Family AT5G22260 29.061 2.64e-81 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele48g1152 PHD 3.8e-08 CL0390