Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1149 ATGGACTCTAGCAATTGTCATGTTATTGAATGTAAAAGGCCAAGCCCTTCTTCTTCTCCAGCCATTAGTGAAGAGCTTAAAGAACAGAAAAAGATAATAGTAGTAAGGTACAAGGAATGCCTCAAGAACCATGCAGCTTCATTAGGAGGACATGCCATTGATGGTTGTGGTGAGTTCATTTCTTCTTCAGAAGAAGAAGGCTCATCACTTGAAGCTTTCAAGTGCTCAGCCTGCAATTGCCACAGGAATTTTCACAGAAAGGAGATCCAATACTGTTATTCAAACTCATCTTCCTCCAATACTACTTTCTGTTATAGCTCTGATCAGCATTATCTAACTACCCCATTGCTTCCAAACACTTCTCAGATCACAAACCCCATAATTCTCGATCATCTTTTATTATCTCCCAACAACAAAACTGGTTCAAATCTGTCAGATCAGTCACATGATCATGACAGTAATAAGAATGATCATGGTGGGGAAGAAGATCATAATGAGGTTGGGAAACCAGAAGATGAGAGGGTGGTGGTGATGATGAATAAGAAGAGGTTTAGGACTAAGTTCAGTGTAGAACAGAAGGAGAAGATGGTGAGATTTGCAGAGAAAGTAGGGTGGAAGATGCAGAAGCTTGAAGAATCTGTGGTGCAGCAATTTTGTGAAGAGATAGGAATCAAGAGGAGAGTTCTCAGAGTGTGGATGCACAATAACAAGAATACTTATGCTAAGGACTTGTGA 735 0.4014 MDSSNCHVIECKRPSPSSSPAISEELKEQKKIIVVRYKECLKNHAASLGGHAIDGCGEFISSSEEEGSSLEAFKCSACNCHRNFHRKEIQYCYSNSSSSNTTFCYSSDQHYLTTPLLPNTSQITNPIILDHLLLSPNNKTGSNLSDQSHDHDSNKNDHGGEEDHNEVGKPEDERVVVMMNKKRFRTKFSVEQKEKMVRFAEKVGWKMQKLEESVVQQFCEEIGIKRRVLRVWMHNNKNTYAKDL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1149 244 FunFam Zinc-finger homeodomain protein 2 169 242 - -
Lele48g1149 244 Gene3D - 169 242 - -
Lele48g1149 244 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 25 239 - -
Lele48g1149 244 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 36 89 IPR006456 -
Lele48g1149 244 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 181 238 IPR006455 -
Lele48g1149 244 Pfam ZF-HD protein dimerisation region 35 89 IPR006456 -
Lele48g1149 244 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 37 88 IPR006456 -
Lele48g1149 244 MobiDBLite consensus disorder prediction 139 173 - -
Lele48g1149 244 SUPERFAMILY Homeodomain-like 175 242 IPR009057 -
Lele48g1149 244 MobiDBLite consensus disorder prediction 145 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1149 Lele-ChrLele48 16126340 16127074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1149 28 242 ZF-HD Transcription Factor Family AT2G02540 46.119 3.47e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele48g1149 ZF-HD_dimer 1.9e-27 No_clan