Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1108 ATGTCTTCTGCCGGCGGTGGCGGCAGAGGGAACGGTGGCGGCGGCGGGGTTACCTTCAGCGGTTCTTCTCAACTCTATTTTTGCCACCAGTGCAACGCGACCGTATCCATTACGCCTTCATCTTCCGGCGATCTCGTTTGTCCCAATTGCAACGGCGGCTTCATTGAAGAAGTAGATAATCCAAGCCCTAATTTTACTAATCCCTTCTTTTCGTTTAGCTCTGAGTTTGGCGGCGGCGGCGGCGGCGACGGCTTCCCTGCAGTATTCTCTACCACTTCGACCGGCGGCGTTAGTGGTGCTGGTGGACCCATTTTCGACGATCTTTCTACTCTTTTTGGTGGTGGACCTAATCGATCGTCTCCTTTTGGAGAAGCTGATGCGTTCAACCCTTTTGTGTTTCTTCAGAACTATCTTCAAACCCTGAGAGCCGGTGGTGCTAATGTTCAATTTGTGATAGAAAACTCTGGAGACCCTAGTGGAACCTTCCGTCTGCCTACGAATCTCAATTTTGGTGATTATTTTTTTGGACCTGGCCTCGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCTAACCGACATGGGACACCCCCAGCTTCGAAATCTGCCATTGAGGGCCTCCCTACTATTAAGATTTCAGAGGAGTTGCTGGCTTCGGAATCATCTCAGTGTGCCGTTTGTAAAGATACGTTTGAGCTCGGGGAAGATGTGAAGCAGATGCCATGTAAACATATCTATCATTCAGACTGCATTTTGCCTTGGTTGGAATTGCATAATTCTTGTCCTGTTTGCCGGTACGAGTTACCAACGGATGATCCTGACTACGATCAACGAACTCGTGGGGCTTCTGCCCAGGTGAATCAAAATCAATCTGCAGGGGGAGGTGGGTCCGCTGGTTCTTCTGAAGGCGGTAATAGTGGCAGTGGCGGTAATGGTGCCAGTGGTGGCAGTGGCAGTGCAGCATCTGGAGAAGACTCACCAAGAGAACGCAGGTTTAGGGTTTCTTTGCCTTGGCCTTTTAGGCAATTGGCTTCCATAGCCGAGACTAGCAGTACTGGGAATACCAACGCCAGCGGAAATAATAGTGGGGAATCAAATTCTGGAGGAAGGGGAAACCAAAATTTTGAGTCGGAGACTAGACAAGAAGATCTCGATTAA 1158 0.4965 MSSAGGGGRGNGGGGGVTFSGSSQLYFCHQCNATVSITPSSSGDLVCPNCNGGFIEEVDNPSPNFTNPFFSFSSEFGGGGGGDGFPAVFSTTSTGGVSGAGGPIFDDLSTLFGGGPNRSSPFGEADAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPSGTFRLPTNLNFGDYFFGPGLEQLIQQLAENDPNRHGTPPASKSAIEGLPTIKISEELLASESSQCAVCKDTFELGEDVKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYDQRTRGASAQVNQNQSAGGGGSAGSSEGGNSGSGGNGASGGSGSAASGEDSPRERRFRVSLPWPFRQLASIAETSSTGNTNASGNNSGESNSGGRGNQNFESETRQEDLD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1108 385 SMART ring_2 224 264 IPR001841 -
Lele48g1108 385 Pfam Ring finger domain 223 265 IPR001841 -
Lele48g1108 385 CDD RING-H2_RNF126_like 223 265 - -
Lele48g1108 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 269 - -
Lele48g1108 385 MobiDBLite consensus disorder prediction 280 321 - -
Lele48g1108 385 ProSiteProfiles Zinc finger RING-type profile. 224 265 IPR001841 -
Lele48g1108 385 MobiDBLite consensus disorder prediction 344 375 - -
Lele48g1108 385 Pfam zinc-ribbon 24 57 IPR039525 GO:0061630
Lele48g1108 385 SUPERFAMILY RING/U-box 204 273 - -
Lele48g1108 385 MobiDBLite consensus disorder prediction 275 385 - -
Lele48g1108 385 FunFam E3 ubiquitin-protein ligase RING1-like 185 271 - -
Lele48g1108 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 271 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1108 Lele-ChrLele48 15807405 15808562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1108 165 317 C3H Transcription Factor Family AT5G01980 42.484 6.10e-37 138