Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1093 ATGTTCTCTTTGTTTGTAGTGCCCATTATGGTAAGAAAAAGGAGAACCGAGGCACCTAGTGCAGGTGAAAGTTCTGAGACTCAGGAGAGTGGGGGCATTAGTCGAGGACCTCAACACCATGTTGAAAGAAGTACTCCACCCCCACAGCAGGCAACAGGAGGGGGAGGATCCCAAGGAGGTAGAGGTTGGGGTCCTCAAGGAGGACGGGGAGGTTATAGTGGGGGCCCGGGTCGTGGGATGCCACAACAGCAGTATGTTGCACCCCCTGAATATCAAGGAAGGGGGAGGGGAGTTTACTCTCAGCAGTTAGGTCGTCGACGTCGTGGTGGGGATGATCGTAGTGTCCGTGGTAGTGGACCTTCTTATAGTGGCCCATCTGGACCTGAAGCTCCCGAACTGCACCAAGCTACCCCCGTTCCACATTATGCTGGGGTGACTCCTCAGTTCACAATGTCAGAGGCCAGTGCTTCTTCCCAACAATTTGATCCCTCACAAGTGGAGCAACAAATGGGGCAGATGACTATTCATTCAGAATCCGTTTCTCCTGCCCCATCCTCAAGTAAATCAGTGAGGTTTCCCCTTAGGCCCGGAAAGGGTAGCTATGGCACCAAGTGTGTTGTTAAGGCGAACCACTTCTTTGCGGAGTTACCTAATAAAGATTTGCACCAGTATGATGTCACTATCACTCCAGAAGTGACATCAAGGGGTGTCAACCGTGCTGTTATGGAGCAGCTGGTGAGGCTTTACCGAGAGTCTCATCTGGGTAAGAGACTTCCTGCATATGACGGGCGCAAGAGCCTTTACACTGCGGGTCCTCTTCCTTTCCTTTCAAAGGAGTTCAGAATCACTCTCCTTGATGAAGATGATGGATCGGGAGGGCCAAGAAGAGAGAGGGAGTTCAAAGTTGTGATAAAATTGGCTGCCCGGGCAGATCTACATCATCTAGGACTCTTCCTGCAGGGAAGGCAGACAGATGCTCCTCAAGAAGCTCTTCAGGTTCTTGACATCGTCCTACGTGAACTACCTACCTCTAGGTATTGTCCTGTGGTGAGATCATTTTATTCACCGTATCTGGGTAGAAGGCAACCATTAGGTGAGGGATTGGAAAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCTACTCAGATGGGGTTATCTCTAAACATTGATATGTCCTCAACTGCATTTATTGAACCATTGCCGGTAATAGAATTTGTTACTAAGTTGCTCAATCGGGATGTCATCTCCCGCCCATTGTCTGATGCAGATCGCGTAAAGATAAAGAAGGCACTTCGGGGTGTCAAAGTTGAAGTGACACACCGTGGAAATATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCACAGGCAACCCGAGAGTTATTGTTTCCCGTTGATGCGAGTGGGACAATGAAGTCTGTTGTTGAGTATTTTTCGGAAACATATGGATTTGCCATTCAACATACCCAATGGCCTTGCTTGCAAGTGGGCAATGCACAGAGACCAAACTATTTACCAATGGAGGTTTGTAAGATAGTAGAAGGTCAAAGGTACTCGAAGAGATTGAATGAAAAGCAGATTACTGCTTTGCTCAAAGTCACATGCCAGCGTCCTGTTGAAAGGGAGCGTGATATTATGCAGACAGTTCATCATAATGCTTACCGTGATGATCCTTATGCTAAAGAGTTTGGGATTAAAATCAGTGAAAAGCTGGCTCAAGTTGAAGCTCGCATCCTTCCTGCACCTCGGCTTAAGTACCATGATGCAGGTAGAGAAAAGGATTGTCTACCCCAAGTGGGCCAATGGAACATGATGAATAAGAAAATGGTCAATGGTGGGACAGTCAACCACTGGATCTGCATAAACTTTTCAAGAAATGTTCAAGACACTGTTGCAAGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTGTGTATCTGGCATGGCATTCAACTCTGAGCCAGTGCTTCCCGCACTTAGTGCCCGTCCTGATTTGGTGGATAAGGTTCTCAAAACTCGATATCATGATGCAAAAACCAAACTGAGGGGGAAGGAGCTTGATCTTCTGATTGTTATTTTACCTGATAATAATGGCTCTCTTTATGGTGATCTGAAACGAATATGTGAGACAGATCTTGGGGTTGTTTCTCAGTGCTGTTTGACTAAGCATGTCTATAAAATGAACAAGCAGTATCTTGCAAATGTTGCCTTGAAAATTAATGTAAAAGTAGGTGGCAGGAACACAGTGCTTGTTGATGCACTTTCACGGCGTATACCTCTAGTTAGTGACCGACCGACAATTATTTTTGGTGCTGATGTTACTCACCCGCATCCTGGAGAGGATTCAAGTCCATCCATAGCAGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATCACAAAGTATGCTGGTTTGGTGTGTGCTCAAGCTCATCGACAGGAGCTAATTCAAGACCTCTTCAAACAATGGCAGGATCCAGTCAGGGGAACAGTAACTGGTGGAATGATCAAGGAGCTTCTTATATCTTTCCTGAGGGCCACTAAGCAGAAGCCGCAGCGCATTATCTTTTACAGGGATGGTGTGAGTGAGGGGCAGTTCTATCAAGTTTTACTGTTTGAGCTTGATGCTATCCGCAAGGCATGTGCATCCCTGGAACCTAATTATCAGCCTCCAGTCACATTTGTGGTGGTTCAGAAGCGCCATCATACTAGGCTCTTTGCCAGCAACCATCATGACAGGAGTTTTGTTGACCGGAGTGGGAACATATTGCCCGGCACTGTTGTAGACTCGAAGATTTGTCATCCTACTGAGTTTGATTTTTATCTTTGTAGCCATGCTGGAATCCAGGGAACAAGCCGTCCCGCTCATTACCACGTTTTATGGGATGAAAACAATTTTACAGCCGATGCACTGCAAACATTGACAAACAACCTTTGTTACACTTATGCTAGATGCACTCGTTCTGTTTCAATTGTGCCGCCTGCATATTATGCTCATTTGGCTGCATTCCGAGCTCGATTTTATATGGAACCCGAGACGTCAGAGAGTGGATCCATGACCAGTGGTGCGGCTGCTGCTCGGGGAGTTGGTGCAGTGCGGAGCACTCGGCCACCGGGTGGTGATGCCACTGTTTGGACTCTCCCAGCTCTTAAGGAGAATGTCAAGAGGGTTATGTTCTATTGTTAA 3183 0.4678 MFSLFVVPIMVRKRRTEAPSAGESSETQESGGISRGPQHHVERSTPPPQQATGGGGSQGGRGWGPQGGRGGYSGGPGRGMPQQQYVAPPEYQGRGRGVYSQQLGRRRRGGDDRSVRGSGPSYSGPSGPEAPELHQATPVPHYAGVTPQFTMSEASASSQQFDPSQVEQQMGQMTIHSESVSPAPSSSKSVRFPLRPGKGSYGTKCVVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDEDDGSGGPRREREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTSRYCPVVRSFYSPYLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTKLLNRDVISRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELLFPVDASGTMKSVVEYFSETYGFAIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPVERERDIMQTVHHNAYRDDPYAKEFGIKISEKLAQVEARILPAPRLKYHDAGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQDTVASGFCYELAQMCCVSGMAFNSEPVLPALSARPDLVDKVLKTRYHDAKTKLRGKELDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVYKMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFLRATKQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRSFVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSESGSMTSGAAAARGVGAVRSTRPPGGDATVWTLPALKENVKRVMFYC 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1093 1060 SMART DUF1785_2 347 399 IPR014811 -
Lele48g1093 1060 CDD Piwi_ago-like 558 1008 IPR045246 -
Lele48g1093 1060 ProSiteProfiles PAZ domain profile. 400 514 IPR003100 GO:0005515
Lele48g1093 1060 Gene3D - 757 1060 IPR036397 GO:0003676
Lele48g1093 1060 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 179 1010 - -
Lele48g1093 1060 Pfam Argonaute linker 2 domain 540 586 IPR032472 -
Lele48g1093 1060 MobiDBLite consensus disorder prediction 152 188 - -
Lele48g1093 1060 Pfam Glycine-rich region of argonaut 88 181 IPR024357 -
Lele48g1093 1060 Gene3D - 578 751 - -
Lele48g1093 1060 SUPERFAMILY PAZ domain 206 551 IPR036085 GO:0005515
Lele48g1093 1060 Gene3D paz domain 393 518 - -
Lele48g1093 1060 Pfam Argonaute linker 1 domain 349 398 IPR014811 -
Lele48g1093 1060 SUPERFAMILY Ribonuclease H-like 674 1009 IPR012337 -
Lele48g1093 1060 MobiDBLite consensus disorder prediction 152 195 - -
Lele48g1093 1060 Pfam PAZ domain 423 530 IPR003100 GO:0005515
Lele48g1093 1060 FunFam Argonaute 10 578 751 - -
Lele48g1093 1060 MobiDBLite consensus disorder prediction 13 135 - -
Lele48g1093 1060 Pfam Piwi domain 689 1008 IPR003165 GO:0003676
Lele48g1093 1060 SMART Piwi_a_2 688 1009 IPR003165 GO:0003676
Lele48g1093 1060 CDD PAZ_argonaute_like 399 513 - -
Lele48g1093 1060 Pfam Mid domain of argonaute 597 671 IPR032473 -
Lele48g1093 1060 FunFam Protein argonaute-2 393 519 - -
Lele48g1093 1060 Pfam N-terminal domain of argonaute 203 338 IPR032474 -
Lele48g1093 1060 ProSiteProfiles Piwi domain profile. 688 1009 IPR003165 GO:0003676
Lele48g1093 1060 FunFam protein argonaute 10-like 757 1060 - -
Lele48g1093 1060 SMART PAZ_2_a_3 404 536 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1093 Lele-ChrLele48 15711708 15717484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1093 90 1060 Eukaryotic Initiation Factors Gene Family AT1G48410 79.857 0.0 1575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0365 45 2865841 2873181 Lele48g1093 48 15711708 15717484 hybridization
Lele46g0394 46 2625478 2645679 Lele48g1093 48 15711708 15717484 hybridization