Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1091 ATGGAAATGCAGGACCAGATAGAAGGTACAAAGTTGAACAGCTCTGGCAATGCTTGTAATAACCATTCCAACAATGGCACACAATCTGAAGAAGTTTCCCTGTTGAAGGATCAAACTCCTAATGGATACAACCATACTCCTAAGGTGAGGAAACCATATACCATTTCCAAGCAAAGAGAAAAGTGGACAGAGGAAGAGCATCAGAAGTTCCTAGAAGCTTTGAAATTGTATGGTCGTGGTTGGCGGCAAATTGAAGAACACGTAGGTACAAAGACAGCAGTTCAGATTCGAAGCCATGCCCAGAAGTTCTTCTCTAAGGTCGCTCGGGAGTCTGATGGCACTGCTGAATGTTCTATAAAACCAAGTGATATACCTCCTCCTCGGCCAAAGAGGAAACCCCTACATCCATATCCCCGTAAATCAGTTGATTCTGGCAAACGCCTATCCATAGCAAATGAAGCGGAAAGATCTCCATACCCAAACCTGGCAGTTGCAGAGAAAGACACCCAATCTCCGACCTCTGTGCTCTCTGCATTTGATTCAGAAGTATTTGGGTCAGCATCTCCAGAGCCGCCTAACAGATGTCAATCGCCTAATTCTTGCGCCACTGATGGTCACTCATCCAACTTATCACTATCACCTGTTGAAAAGGAAAACGATTGCATGACATTCGACTCATCTGTGGAGGAAGAGAAAGGATCTCTTACTTCACACTCTTTATCTGCTGGTTTGAGCTTACATGTGTTCTCAACGAAGTCTGCTTTGAGTTCCATGGATACTGAATCTTCTGTTGAAGATGCTACCAACGGTGCACGTGTTACAAGTATTAAGCTGTTTGGAAGAACTGTTCTGATGGTAGACAATCGGAAGTCACTTGATGTTGATGGGGAGAACATCAAGGCAATTGCAAGCAAGTCTGCTCAAGTAGATGATGTTGAGAACGAAAAGCTTGGCCAAACATGGCCATCCAGCCAACTAGATTCACAATTATCATTAGGCATGTGTAGTAGTACTACAACCCTGGAAGGAGCTGTGTCAAATTGCTGA 1047 0.4413 MEMQDQIEGTKLNSSGNACNNHSNNGTQSEEVSLLKDQTPNGYNHTPKVRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVARESDGTAECSIKPSDIPPPRPKRKPLHPYPRKSVDSGKRLSIANEAERSPYPNLAVAEKDTQSPTSVLSAFDSEVFGSASPEPPNRCQSPNSCATDGHSSNLSLSPVEKENDCMTFDSSVEEEKGSLTSHSLSAGLSLHVFSTKSALSSMDTESSVEDATNGARVTSIKLFGRTVLMVDNRKSLDVDGENIKAIASKSAQVDDVENEKLGQTWPSSQLDSQLSLGMCSSTTTLEGAVSNC 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1091 348 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Lele48g1091 348 SMART sant 58 106 IPR001005 -
Lele48g1091 348 MobiDBLite consensus disorder prediction 7 45 - -
Lele48g1091 348 PANTHER SWI/SNF COMPLEX-RELATED 24 294 - -
Lele48g1091 348 MobiDBLite consensus disorder prediction 125 142 - -
Lele48g1091 348 MobiDBLite consensus disorder prediction 1 54 - -
Lele48g1091 348 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lele48g1091 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Lele48g1091 348 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Lele48g1091 348 MobiDBLite consensus disorder prediction 164 181 - -
Lele48g1091 348 MobiDBLite consensus disorder prediction 110 217 - -
Lele48g1091 348 Gene3D - 61 108 - -
Lele48g1091 348 SUPERFAMILY Homeodomain-like 53 108 IPR009057 -
Lele48g1091 348 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Lele48g1091 348 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Lele48g1091 348 MobiDBLite consensus disorder prediction 190 216 - -
Lele48g1091 348 CDD SANT 61 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1091 Lele-ChrLele48 15696690 15699147 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele48g1091 Myb_DNA-binding 5.7e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0369 45 2896174 2896672 Lele48g1091 48 15696690 15699147 hybridization
Lele46g0395 46 2645835 2648283 Lele48g1091 48 15696690 15699147 hybridization