Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1088 ATGAGTGCATCGACGACGAGGAAGAAGGTCCAGCGTAAGTGTAAAATCAGAGGGTACACTCTCAAAGTGGACGCTCTTGATGATATCCTTTCCTTCGTAAGTCGATTTGATGCCGCTGATGAAGATGAAGCCATCGATCTCCTCCTCGATCAGCTTGAACACGAATCTCTGAAATCTACAATAATAGACAAAGAACCGGTGCATCGGGTGGTGAGCCTGCTGTTAGAAGCCGAAGCAGCGGTTGAGGAAAGCTCTGATGCTGTTGGCATTGGTTCAGTCTTTCGCGTCGTTGATGCATTCTTAGTCCCTAAATTTCGATACGACCCTATCAAAAAGCAATTCTACGAGCATACAAGCAACTTACCTATTCATGGGGAAGCATCGGCTAAAGCGGCTCTGTACAGGGACAGATTTCTGTTGCTGTTCCAGAGACTCTCTCGTGACCAGCATTTTGCAAAGCCGGCTTTTGATTCTGAGTCTTCGCATTTTGGAAGCTGTGAGATATCTCCCATCCAATCTCTGGTTGGGCAAACAGGTAGAAGATGGATCATGGGAGTGATATCACAGCTGGAGGATGGGCATTTTTATTTAGAAGACCTAACTGCTTCGGTTGAAATCAATTTTTCTACTGCTATATCCTTTTGATTCTTTACAGAGAACACCATAATTGTGGCAGAAGGTGAGATGCTGGTGGGGGGTGTTTTTCAGGTCTTAACATGTGGATTCCCCCCATTGGAGGACAGAGATAAGTCACTAAAATTAAGTGGGGGGCACGACTTTTTTGGAGGTGGCACTTTTACCAAAGAGGAAACTATCAGGCTAGCAGAGATGGAAAAGAGAGCAGTCAATGACATGTTTGTTATACTGTCTGATATATGGCTAGACAGTGAAGAGGCTATGGGAAAGCTGCAGACTGTACTGGATGGTTTTGAGAGTGTGGAAGTGGTCCCTTCCTTATTTGTTTTCATGGGAAACTTCTCTTCTCATCCATGTAACCTTTCCTTTCATTCTTACTCAAGCCTCCGGTTGCAGTTTGGTAAGCTAGGGCAAATAATTGCTGCCCATCCACGGCTAATAGAGAAAAGTCGATTTTTGTTCATTCCTGGTCCTGATGATCCAGGTCCTTCAACAGTTCTACCTAGATGTGCTCTGCCAAAATATTTAACTGAGGAGCTCCAGAAGCACGTTCCCAATGCCATATTTTCAAGCAATCCTTGCAGGATCAAATTTTACACTCAAGAAATTGTATTTTTCCGCCAGGATTTGCTGTATAGAATGCGCCGATCATGTTTAATGCCGCCTTCTATGGAAGAAACTGACGATCCCTTTCAGCATGATTTTGAATTTATATTGCAGCTTGTTGCTACCATAGCCCACCAGAGTCATCTCTGTCCGTTGCCTCTAACAGTACAACCCATCATCTGGAACTACGATCACTGCCTATATCTTTATCCAACTCCACACACGATAATCTTGGGAGACAGAAGTGAGCAAAAAGCTTTCAAATACACAGGAATCACTTGTTTTAATACTGGTTCCTTCTCAATTGACAGCACCTTTGTGGCGTACCGACCATGCTCTCAGGAAGTAGAATTGTCAGCCTTAGAAGGAAGAATCATAGCAGTCCAAACTGTGTTCGGCAAGATGATGAAATATGTTTATTATGGGATCTTGATCGATGGATTATGTAAGGTTAAAATGGTTGATGAAGCTATGGATTTCTTTGAAGAAATGCGTCGCAAAAACATTGTTCCCAATGAAGTAATTTACAGTTTTCTTATTGATGCTTTGTCTAAATCAGGGAGAATTCAAGCTTCGGAAGATCTTTTTTGTGAGATGATTTACCATGGTCATACTCGTGATATAATCACCTATAATATTTTATTAGATGCATTTTGCAAAACACAGAATCTTGACGTGGGGATTGCGATAATCAAGAAAGCTGTTGGCATAGGAATTTGGCCTAGTGTATACACATTCAGTATACTTCTTGATGCTTTGCTGAGTCATTTGTTTGGTCTTCTCTCCTTGTGCTCTGATGAACTTGTCCCTGATGACAATTTTTCATGGCTCAGGGAAAAGATACTACTTTCTACCTCATATGAAGACCTTCTCAAAGTTATCATTATCATTCTCCGTAGTCTGCGGAAGAAAAGTAGTGAGATACTTCATAAAGGTGGTCAATTACATCTCCACGGCTCCACCCATTTTTTGCTCTTCAATCCTCCTCCCATCAGATCCCCAAAATGTAGTCTGCCAAACATCTCACCTTCTTCTTAA 2280 0.4215 MSASTTRKKVQRKCKIRGYTLKVDALDDILSFVSRFDAADEDEAIDLLLDQLEHESLKSTIIDKEPVHRVVSLLLEAEAAVEESSDAVGIGSVFRVVDAFLVPKFRYDPIKKQFYEHTSNLPIHGEASAKAALYRDRFLLLFQRLSRDQHFAKPAFDSESSHFGSCEISPIQSLVGQTGRRWIMGVISQLEDGHFYLEDLTASVEINFSTAISFXFFTENTIIVAEGEMLVGGVFQVLTCGFPPLEDRDKSLKLSGGHDFFGGGTFTKEETIRLAEMEKRAVNDMFVILSDIWLDSEEAMGKLQTVLDGFESVEVVPSLFVFMGNFSSHPCNLSFHSYSSLRLQFGKLGQIIAAHPRLIEKSRFLFIPGPDDPGPSTVLPRCALPKYLTEELQKHVPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLMPPSMEETDDPFQHDFEFILQLVATIAHQSHLCPLPLTVQPIIWNYDHCLYLYPTPHTIILGDRSEQKAFKYTGITCFNTGSFSIDSTFVAYRPCSQEVELSALEGRIIAVQTVFGKMMKYVYYGILIDGLCKVKMVDEAMDFFEEMRRKNIVPNEVIYSFLIDALSKSGRIQASEDLFCEMIYHGHTRDIITYNILLDAFCKTQNLDVGIAIIKKAVGIGIWPSVYTFSILLDALLSHLFGLLSLCSDELVPDDNFSWLREKILLSTSYEDLLKVIIIILRSLRKKSSEILHKGGQLHLHGSTHFLLFNPPPIRSPKCSLPNISPSS 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1088 759 TIGRFAM PPR: pentatricopeptide repeat domain 555 587 IPR002885 -
Lele48g1088 759 TIGRFAM PPR: pentatricopeptide repeat domain 588 614 IPR002885 -
Lele48g1088 759 Pfam PPR repeat family 553 599 IPR002885 -
Lele48g1088 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Lele48g1088 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Lele48g1088 759 Pfam Pentatricopeptide repeat domain 611 666 IPR002885 -
Lele48g1088 759 Pfam DNA polymerase alpha/epsilon subunit B 286 498 IPR007185 GO:0003677|GO:0006260
Lele48g1088 759 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 4 535 IPR016266 GO:0003677|GO:0006261|GO:0008622
Lele48g1088 759 Gene3D - 1 72 - -
Lele48g1088 759 Gene3D Tetratricopeptide repeat domain 529 685 IPR011990 GO:0005515
Lele48g1088 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1088 Lele-ChrLele48 15667971 15678143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1088 17 492 Core DNA Replication Machinery Family AT5G22110 70.231 0.0 687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0374 45 2929844 2933036 Lele48g1088 48 15667971 15678143 hybridization
Lele46g0398 46 2671892 2676720 Lele48g1088 48 15667971 15678143 hybridization