Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1084 ATGGCGGTATCACGACGAATAAAAGAAAGAGAAGACCCGCTGGAACTCCAGGCAATTGAATTGGCTACAGATCCGGATGCGGAGGTGGTGTCGCTGTCGCCGAAGACTTTACTGGAATCGGACCGGTACGTATGCGAGATCTGTAATCAGGGGTTTCAGAGGGACCAGAACCTGCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGTTGCTAAAGAGGGAGACGCCGGCGGCGAGGAAGCGCGTGTTCGTGTGCCCGGAGCCGACGTGCTTGCACCACGACCCGTGCCACGCTCTGGGGGATCTCGTCGGAATAAAGAAACACTTCAGAAGAAAACACAGTAAGCACAAACAATGGGTCTGTGAACGATGCTCAAAAGGCTACGCAGTTCAATCTGATTACAAAGCTCATCTCAGAACCTGTGGTACCAGAGGCCACTCTTGCGATTGCGGTCGCGTCTTCTCCAGGGTGGAGAGTTTTATTGAACACCAAGATGCTTGTAACATGGGGCGGATCCGTTCGGAAACGCAGGCGGCGGTACATCAGCAGCAGCAGCCACTGGCGCTGGCGTGCTTGTCGCGAACGGCTTCGAGCCCGAGTCAGTCGAGTGAAACCAATTTCCGCACCGGTCCGAACTGGAATAATGGTCTTCTTGTGTTGCCTAATAAGCCGACGACAAGGCCGACGACTGAAGCGGCGTTATTGTTGAACCCTACCGTTACTACTTCCACTACCACAACGGTTGCTCATCATCATCATCATCATCATGAAACCTCATCCGACAATAAGAACAAGTATAAACTGTGTCCAAACTTGGATCTTCGTCTCTCTACTTCCTCTAGTTCCATTATTCCAATTGATACTTCAACAACACCTAATAAGAGAGATGAAATTACCCGATCATCAAACCACTTTCGGATTTCGATTTGCGACAACAATCGCAGGAATTCACCCAAGGAGAGCTGTAACAGTAGCGATAAACCACAAGGTAGTAATGGAGGGATGATGAGGGTGGTTCATCATGAAGAGGAAGCACGTGAGCAGTTAAGGTTAGCCATGGCGGAGAAGGCATATGCAGAGGAAGCAAGGAAGCAAGCGAATCGACAGATAGAAGTTGCAGAGAAGGAGTTTGCTAATGCGAAGAGAATCAGACAAGAAGCACAAGCTGAACTTGACAAAGCCTACACTGTTAAAGAACATGCCATTAAACAGATAAACTCTCTCATGCTTCAAATCACTTGTCATGCTTGCAAAAGACAGTTCGGAGCCCAAACGATGCCGACACCGAAAATGTTGGCGGTTCCTCCGCCGGCGCCGGACGAGAACTCATTGGTAGTAAGCTACATGTCGTCTGCTTTAACAACTGAAGGTGGCGAAGAAGAGAACTATAATAATAATGAGAAAAATGATGGGAAAAATAGTAATAACTCTTTATCATCTCTTTAA 1449 0.4865 MAVSRRIKEREDPLELQAIELATDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSKHKQWVCERCSKGYAVQSDYKAHLRTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIRSETQAAVHQQQQPLALACLSRTASSPSQSSETNFRTGPNWNNGLLVLPNKPTTRPTTEAALLLNPTVTTSTTTTVAHHHHHHHETSSDNKNKYKLCPNLDLRLSTSSSSIIPIDTSTTPNKRDEITRSSNHFRISICDNNRRNSPKESCNSSDKPQGSNGGMMRVVHHEEEAREQLRLAMAEKAYAEEARKQANRQIEVAEKEFANAKRIRQEAQAELDKAYTVKEHAIKQINSLMLQITCHACKRQFGAQTMPTPKMLAVPPPAPDENSLVVSYMSSALTTEGGEEENYNNNEKNDGKNSNNSLSSL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1084 482 MobiDBLite consensus disorder prediction 309 332 - -
Lele48g1084 482 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 451 IPR031140 -
Lele48g1084 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 65 IPR013087 -
Lele48g1084 482 SMART c2h2final6 120 147 IPR013087 -
Lele48g1084 482 SMART c2h2final6 43 65 IPR013087 -
Lele48g1084 482 SMART c2h2final6 84 114 IPR013087 -
Lele48g1084 482 MobiDBLite consensus disorder prediction 454 482 - -
Lele48g1084 482 SUPERFAMILY beta-beta-alpha zinc fingers 42 141 IPR036236 -
Lele48g1084 482 Coils Coil 343 391 - -
Lele48g1084 482 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Lele48g1084 482 MobiDBLite consensus disorder prediction 245 265 - -
Lele48g1084 482 FunFam protein indeterminate-domain 12-like 22 90 - -
Lele48g1084 482 Pfam Zinc finger, C2H2 type 43 65 IPR013087 -
Lele48g1084 482 Gene3D Classic Zinc Finger 22 85 - -
Lele48g1084 482 MobiDBLite consensus disorder prediction 309 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1084 Lele-ChrLele48 15638697 15641266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1084 24 458 C2H2 Transcription Factor Family AT1G25250 46.469 3.44e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele48g1084 zf-C2H2 0.0046 CL0361