Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1077 ATGGTGTTGGGATGGAATCGAAGAAAGAACAAGAACAGAAAGCTCAATCTGGAGCTCGTTATTCCGAACCACTTCATTTGCCCTGTTTCTCTTGATTTGATGAAAGATCCCGTCACGTTATCATCTGGAATCACCTACGATCGTGCGAGCATTGAACGGTGGTTCGAAGATGGGAATTTCACGTGCCCTGTGACGAATAAGATTCCCTCCAGCTTCGATATCGTTCCTAATCACTCGCTTAGGGTTATGATTCAGGATTGGTGCGTTGAGAATCGAGGATTTGGGATCGAGAGAATTCCGACTCCCAGAATACCTGTTTCTCCAACCCAAGTCGAAGAGATTCTTATTCATCTTAAAGCCTCGGCGTTGCGTTTGGATCGGTATGATTTTCTTCAAGTCGTGCAGAGAATCAAGGAATGGAGTTCTGAGAGCGAGAGAAACAGAAGATGCATTGTGGACAATGGTACTCCTAGTGTATTAGCATCTGCATTCCGTGATTTTGCGAATGACTCTATTGAGGAAAATTTGAGTTTGCTGGAGGAAATTTTGAATGCCCTAAATTGGATGCTTCCTCTTAAATTCGAAGCCCAGAAAATTTTGCAATCTTCAGATGCCTTGCGTTGCTTGGTTTGGTTCTTGAAGAATCAAGATCTTTCCGGAAAACAGAATGCCATTGTTGCTTTGAGAGAGATCCTTTCTTCTGGCGATGAACAGACTTTTGAGACTACGGCAGAAATCGAAGGGACCATTGAGCTATTAGCGGAGTTCATTAACAAGAGAATTAACCCAACAATCACGAAAGCTTCAATGGGGATTGTTTATTACTTGGTTTCATCTTCTTATCCATCAAGTGAGAAAGTGAAGATAAAATTTATTGGACTTGGTTTGATCTCTTCACTACTGGAGATCCTAATTGATGCAGACAAGAGCCTATCTGAGAAGGCTTTAGGTGTTTTTGATTCACTCTGTGACTGTCAAAAAGGTATAGAAAAGGCTTTCAGTAATGCTCTAACAGTTCCTGTATTGGTGAAGAAGATTTTGAGGGTTTCAGCTTTAGCAACAGATCACTGTGTGTCTGCTATTTGGAAGTTATGCAGATATGGATCTAAAGATGAAGAAGAAGTAGAAGAAGTAGAAGAAGCTCTGATTGAAGCGCTTCAAGTTGGTGCGTTTCAGAAGCTGTTGGTGGTGTTGCAGGTTGGTTGTGGTGATGAGACGAAGGAGAAAACAACAGAGCTTCTGAAATTGTTCAATCCTTATCTGGCTGGCTTGGAATGCATAGACTCAGATTTCAAGAATGTCAAGAGATCATTTTGA 1317 0.4153 MVLGWNRRKNKNRKLNLELVIPNHFICPVSLDLMKDPVTLSSGITYDRASIERWFEDGNFTCPVTNKIPSSFDIVPNHSLRVMIQDWCVENRGFGIERIPTPRIPVSPTQVEEILIHLKASALRLDRYDFLQVVQRIKEWSSESERNRRCIVDNGTPSVLASAFRDFANDSIEENLSLLEEILNALNWMLPLKFEAQKILQSSDALRCLVWFLKNQDLSGKQNAIVALREILSSGDEQTFETTAEIEGTIELLAEFINKRINPTITKASMGIVYYLVSSSYPSSEKVKIKFIGLGLISSLLEILIDADKSLSEKALGVFDSLCDCQKGIEKAFSNALTVPVLVKKILRVSALATDHCVSAIWKLCRYGSKDEEEVEEVEEALIEALQVGAFQKLLVVLQVGCGDETKEKTTELLKLFNPYLAGLECIDSDFKNVKRSF 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1077 438 SUPERFAMILY ARM repeat 133 387 IPR016024 -
Lele48g1077 438 Pfam U-box domain 21 92 IPR003613 GO:0004842|GO:0016567
Lele48g1077 438 Gene3D - 114 415 IPR011989 -
Lele48g1077 438 PANTHER WDSAM1 PROTEIN 18 427 IPR045185 GO:0061630
Lele48g1077 438 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Lele48g1077 438 CDD RING-Ubox_PUB 25 67 IPR045210 -
Lele48g1077 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 94 IPR013083 -
Lele48g1077 438 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Lele48g1077 438 SUPERFAMILY RING/U-box 21 95 - -
Lele48g1077 438 FunFam RING-type E3 ubiquitin transferase 21 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1077 Lele-ChrLele48 15576641 15577957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1077 18 438 U-box Gene Family AT5G37490 42.453 1.02e-105 318