Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1052 ATGGGTTCATCAAACATAAGGGACGTTTTAACAGCGTTTAGTCCTTCGTTAGACTTGTTTGCTGTCAGCGCTGGAGATGGTCGCATCAAGATATGGGATACACTAAATGGTCAAATCCAGACGGAGTTTGCAGACATCACATCAAGTGATGCAACAAATATATATGCAGGATCAATGAAGGGCCATCTTTCAATAGATTATACATGCATGAAGTGGTTGTCTTTGGAAGGAAAGGTTGGTAGTGGTGACGTGTTGGCACTTGATGTGTCTGCCGGTCAGTTAAATTGGAGAATTGATGACTGCCATCCTGGGGGCGTGAAAGCTGTTTCATCTTCTGCAAATGGATCATGTGTTTATACTGCAGGTGCAGATGGAATGATTTGCAAAATTGATTGCAAGACAGGAAACCTGTTGGAAAAATTCAAAACTTCTACAAAGGCAATATCCTCTATGTCTGTTTCTTCAGATGGGAAGATAATAGCTACTGCAGCAGCACAGCTGAAGATTTTCAATTGTTCTGATCACAAAAAGATACAAAAGTTCTTTGGCCATCCTGGATCTGTTCGGTGTCTTGTCTTCACTGAAGATGGGAAATATGTTCTATCCTCTGCTGTCGGTGAAAGATATGTTGCTGTCTGGAGGATTGATGGGGCAAAAAAGAAGTCAGTTAGTTGTGTTCTTGCAATGGAGCACCCTGTTGTTTTTCTTGATAGCAGGTGCACTCCTAGCAGGGAGCTTGACAATGTTGTCGTATGTGTTTTGGCTATCTCAGAAGTTGGTGATTGTTATGTTTGGATTGGAAATAGTATTGAGGAACTACGTGATGTGAAGCCCACTAAAATATCATTATCTTTGGAAGGCATATCCTCCAGAAATTACAAGGGTGCATTGCCAGCAATATATGCGGCAAAGTTAGAAAGCATTAACAATCCTACCTCTGGGCAGGTTTTTCTTGTTCATGGGTTGCTTGTAAAACCATCATTCCAAAAAATTTCGGTGCAATCTGGCTCAGACATAAAATTAAATTTCTCTGATGATGGTATTCTTCTTCGGCTGAACAGGTCCCTTGTAAAGTCTAGGAAGGCAAAAGATGTAAAGAAAGGTGACAATTTATTGTCTTTACAGAACTTTACTGCACTAGACCGTGCTAATGCAGAGGATGCCTTGCTCCCAATTCCTAAGCTTTTTGATTCTTATGTGCAAGAGAAAGAATTTCAAGACTCTTCAGTCAAGGAGGTTATGGATGATTTGGTTAGAAGTAGTGAATCTGTTTCTATGGAGATTGAAGATGAGATGGCCGGCGAGACTGATGTGATCTGCATGGAGGACAAGATGAGATCTCTGGGGATACTTGATGATGAAAATGATCTTGAATCAAATATTAAATTTAATTCTTCATTTTTGAAGGGTGATCTTGAAGCTACTCTTCCAATGAGAAAGATAAGGGCAACTCTCTTGACTATGGAGCCATCTGAAGCATATAAGCTCCTGGAAGTTTTGCTGACTCTTTGGCAATCAAGCTCTTCTACCGGCAAGTGCGCTCTTCCGTGGATATATAGCATATTAGTGATTCATGGTCACTACTTAATTTCTCAGGAAAATGTGACACATATGCTTGATTCCTTGACCAAGATAGCTGGCTCTAGAGGATCTGCAGTTGAGACTTTGTTACAGTTATCAGGTCGTCTGCAATTGGTGACAACACAGATTAAAAAAGCTTCTAAAAATACAACTCAAGTGAGAAATCCTCAAATGGAAGAAAGCGAAGATGAGGACAGAGAAGATTATATTGAAGAGGAAGGAGATGATGCATCTGAAATAAGTAGTGATGATGATGACAGTTAG 1845 0.4022 MGSSNIRDVLTAFSPSLDLFAVSAGDGRIKIWDTLNGQIQTEFADITSSDATNIYAGSMKGHLSIDYTCMKWLSLEGKVGSGDVLALDVSAGQLNWRIDDCHPGGVKAVSSSANGSCVYTAGADGMICKIDCKTGNLLEKFKTSTKAISSMSVSSDGKIIATAAAQLKIFNCSDHKKIQKFFGHPGSVRCLVFTEDGKYVLSSAVGERYVAVWRIDGAKKKSVSCVLAMEHPVVFLDSRCTPSRELDNVVVCVLAISEVGDCYVWIGNSIEELRDVKPTKISLSLEGISSRNYKGALPAIYAAKLESINNPTSGQVFLVHGLLVKPSFQKISVQSGSDIKLNFSDDGILLRLNRSLVKSRKAKDVKKGDNLLSLQNFTALDRANAEDALLPIPKLFDSYVQEKEFQDSSVKEVMDDLVRSSESVSMEIEDEMAGETDVICMEDKMRSLGILDDENDLESNIKFNSSFLKGDLEATLPMRKIRATLLTMEPSEAYKLLEVLLTLWQSSSSTGKCALPWIYSILVIHGHYLISQENVTHMLDSLTKIAGSRGSAVETLLQLSGRLQLVTTQIKKASKNTTQVRNPQMEESEDEDREDYIEEEGDDASEISSDDDDS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1052 614 Pfam Dip2/Utp12 Family 477 567 IPR007148 -
Lele48g1052 614 MobiDBLite consensus disorder prediction 573 614 - -
Lele48g1052 614 Pfam WD domain, G-beta repeat 6 33 IPR001680 GO:0005515
Lele48g1052 614 Pfam WD domain, G-beta repeat 178 213 IPR001680 GO:0005515
Lele48g1052 614 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 219 IPR011047 -
Lele48g1052 614 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Lele48g1052 614 Gene3D - 3 286 IPR015943 GO:0005515
Lele48g1052 614 MobiDBLite consensus disorder prediction 588 614 - -
Lele48g1052 614 SMART WD40_4 3 33 IPR001680 GO:0005515
Lele48g1052 614 SMART WD40_4 134 171 IPR001680 GO:0005515
Lele48g1052 614 SMART WD40_4 174 214 IPR001680 GO:0005515
Lele48g1052 614 SMART WD40_4 91 131 IPR001680 GO:0005515
Lele48g1052 614 PANTHER OS03G0300300 PROTEIN 3 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1052 Lele-ChrLele48 15386919 15391218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1052 102 213 U-box Gene Family AT2G33340 27.586 4.34e-07 50.8