Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1043 ATGGATGTGGATGCAGAATCCGATGTGACACGTGTGAGGCGGGTGGGGCCAACGCGGAGGGGAGGTGGGGCCCAATGGACCACATCAGAGCACGGCAAAGCCAACTGCTTGGGCGGCAAGACGATGGGAGTGAAGGGTCTCTGGGAACTTCTTGCCCCCGTTGGTCGTCGGGTCTCCGTCGAGACCCTTGCCGGGAAGAAGCTTGCCATTGACGCGAGCATATGGATGGTTCAGTTTATGAAGGCGATGCGGGATGAGAAGGGAGAAATGGTTCACAATGCTCATTTGCTCGGCTTCTTTCGTCGAATTTGTAAGCTCTTGTTCCTCCGGACTAAGCCTGTTTTTGTCTTCGATGGCGGCACGCCTGTTCTTAAGCGACGAACTGTGATTGCGCGTCGGAGGCAGCGGGAAAATGCTCAGGCCAAAGTTCGAAAGACTGCCGAGAAATTGCTTCTAAATCATTTAAAGGCTTTGAAGTTGAAAAAACTTTCAGATGATGTTAAAAACCAGAGGCTGAAGCAGAACAGTGACGCTAAGGGTAAGAAAAAATCAGATCAGGTGGACTTAATTGGTGGTGATTTGGGAAGAAACAATGGAAAAGAACAAGATAAAATATGGGGAGCTGAGGTGGACAAGAATATATCCAAGACTACAGTAACAAGTTGCAATCAGGAGGAACTCGATGCAATGTTGGCCGCGTCTATTGTTGCAGAGGAAGATGGATTATTAGCTGGCAAAGCACCATCGGGTGTTGTTAGTCTCTCTGAGGAGGAAGGAGATACAGATCAAGAAATAATATTGCCAGAGTTAGGTGCTGAAGTTGATCTATCTGTGTTGGCTGCTTTACCGCAGTCAATTCAACTTGATATTCTCTCTCAGCTTAAAGGTAAAAAGGTAGAAGGACTACTGAAGGATTCTAACAACCAGAACCAATTTGAGGTCAATGAAAGCAGGGGCAAGGGTAAGGGAATTCTATTGCATGAAGTCGACACAGTAGGTTGTAGCTCAGGCAGTGATGATATGGTGGCAAAGAAATACAATCAGGACAAAGTGGATGAAATGTTGGCTGCATCTATTTTGGCTGAGGAAAATGAGAAGTTAGTAAACAATGCATCAACATCTGGTGGGGCTTTCATCTCTGAGGAAGAGGATTACGTTAATGATGAAGATGAAGAAATGATCCTGCCAGCAATGCATGGTAAGGTTGATCCAGCTGTCCTAGCCTCTTTGCCTCCATCAATGCAACTTGACCTTCTTGGTCAGATGAGAGAGCGACTAATCTCAGAGAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAATTGCAAATACAGGCTTACCTTAAAACTGTTGCTTTTCGTCGGGAGATAAATGAAGTGCAGAAAGCTGCTGCAGGGGGAGTGGTAGGTGGTGTCCAGACTTCTCGTATTGCATCTGAAGCCAACAGAGAGTATATATTTTCAAGATCTTTTACCGGTGATAAACAAGAACTTACTTCTACCAGCTTAGAGAAAAATAAAGACACACATCAGAAGACTCTAGGAAACCATTTTTCTCAAGGTTTTGTGAATAACAGTGATCCTGCCAATGATTCTAGTACCTCAAGTGGATTAGTTTGCAATGAAGCTGTAAGTCCATCTGATGAGAATATCCAAACTTATCTGGATGAGAGGGGCCAATTTCGTGTTAGTAGACTTAGAGCTATGGGGATGCGTATGACCCGTGACATACAAAGAAATTTGGATCTGATGAAGGAGATTGAGCTGGAAAGGACTGTTGCAAATAAGGCAGAAAATAATTATGCAATTCTTAGTGGGGAGGAAAATGTTGCATCAAAAGGTTCTAGCAACCTGCTTGTAGGTATGTCCAGTGGGTCAAATGTTGACTTAGTTGGAGATAATTCTAGAAATGAACACCCTTCATTAGCAGGGGATGCTTCTTTAGAGATATCCTTCATGGATGATGGTGATAACAAGTGCCCTAATGATGATCATGATTTATTTGCCAGTTTGGTAAAAGGCAATTCAGTAGTATTTTCTTGTGCTGACAATAACTCGTTGAAAGAACAAGTTTCTGATTCTAGTTCTGATTGTGACTGGGAAGAAGGAATTGTTGAAGGTAAAAGTGATGTTAATGTGGAAATGAAACCATCTGTTGCAAAAGATAATTGTAATGATGAGTCTGATGTGGAATGGGAGGGCGGAGTTTGTGATGATGCTAACACAACATTGTGCACAGTTGAGGCACAGAAAAAAACATCTCGAGGTTGCTTGGAGGAGGAGGCTGATTTACAGGAGGCAATACGGAGAAGTCTGGAGGTCATGGGGGAACGCAAACTTAATTCCACGTCATCCAAGCATGAGAATTCAAATGCTGACGGGTACAAATCAGGTTATGCATTAAACCAAGATGATAATTTGGTTGATTCTGGAGTGAAGCGTATTTGTGGCAATTCTGGAGTACTAAATAGAGACATTGGAATGGGTGAATCCACTTTGCAAAGGGAATGTAACACTGAACACAGTGAATCATATGATAAAATTATAGACGATAAGATGGATAGCACAGCGAGAAGCATCAAACAAGTTTCCCAGTCTCCTGGCGGACAGTCAAAATCATCTGTGGCATTTGACTCCAAGAAGTCAGTATCACTTATCAAGAAGCCTCATTCAATAGAGGTAGGACCACATTCTGAAGATTTGTTGTACTCTGCAAATGAAAGTACGAGGAATGAGATTCACATGGCTGCAGAGCAACTCCTAGGTACTTTAAATGAAGATGGCAAGGAGTCTACCAATGGTAACAAATCTCCTGTAGTTGACTCCCTTGGTGCTTCAGAGGAGGAGAAAAAGAACTGCAGTTATGAAGCTGAACCTTTTGGTAATTATTCTGAGGTGCCTGAGCCTGTTGCACCTTTTGTGAATTCCTTCTTGGAAGTTTTAACAGAAGACCTTGACACTCAGCCAGAGTTGCCTAGAGAGGAAAACTGTGGAAGCTTTTTGAAAAGGAAGAGTAACCTTGGTAAAGACGCAATGGAGCCCCTGGGTTTCTTGTCTGCCGAAGACATTGAAACTCAGTCAGAGTTGCCTAGAAAGGATAACCATGGAAGCTTTGAGGAAAGCAAGAATAATCTTGTCAAAGATGCAATGAAAGCCCCAGGTCATTTGTCTGCAGGTGGAATCGAGTGTGGTTTGGAGGAAGAAATTCGAATTCTTGGTCAAGAATATACCAACCTAGAATATGAGCAGAGGAAGCTTGAACGCAATGCAGAATCTGTCAACAATGAATTATTCACTGAATGTCAGGAACTATTGCAAATGTTTGGCTTGCCATATATTATCGCTCCAATGGAAGCAGAAGCACAATGTGCTTATTTGGAACTTGCAAAACTGGTGGATGGTGTTGTGACTGATGACTCTGATGTCTTTTTATTTGGGGCACGTAGTGTCTACAAGAATATATTTGATGATCGCAAATATGTAGAGACATACTTCATGGAGGACATCGAGAAGGAGCTTGGATTGACCAGAGAAAAATTAATCCGCATGGCTTTGCTTCTGGGGAGTGATTATACTGAAGGTGTAAGTGGAATTGGAATTGTAAATGCTATTGAGGTTGTAAATGCATTCCCTGAGGAAGATGGCCTTCTGAAATTCCGGCAGTGGGTTGAGTCACCTGATCCTACCATCTTTGGAAAGTTTGAAACAAAAAGCGGATCCAGTTCCCGAAAGAAAGGGTCAAAAGTTGAAGAAAACGTTACTGGCACAAATTGCTATATAGAAGAGACTATGGTGGATCAAAACGTTTCCCATGCTCAGGAACATGAGTCATCAGATGACATACACGAAATCAAGCAGATTTTCATGAATAAACATAGAAATGTGAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCCTACTCTTGTCCACAAGTGGACAAGTCTACTGATCCATTTGCCTGGGGAAAGCCGGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAGTTTGGCTGGACTAGTCAGAAAGCAGATGAGTTGCTTTTACCTGTTTTAAAGGAATATAACAAAAATGAGACTCAACTGCGGTTGGAAGCATTTTATACTTTCAATGAAAGATTCGCAAAAATTCGCAGTAAGAGAATTAAGAGAGCAGTGAAAGGAATCACTGGCAATCACTCTTCGGAGTTTACAGAAGAATCTGCAGAGGACTTGTCTAAGAGTGGGAAGAATGAGACAGGAATTCCTGCTGAACTCGGGATTAGCAAATCAGAGACTTTTAAGGGAACAGGAGAAAGCCCTGCTGAAATGAAGACACTAAAGTCAAAACAGTCAAGGAAAAGGAAGAATTCTGTAGATACTGTTGCTAAGACTAAGACACAGTCAAGGAAAAAGGGTAAATTGAATGCTCCTGCATCAGCTTCTGGTCTGCCTGACGTAGATGTGCAGACAGGAGAAGAGCCAACTCAGCCAAGTGATGGTAATGGTTTGAGTCGGAATAGAAGTAGCAAAGGCAGAGCAAAAGGTTCAAGAGTTCCAACAGGAAGGAGGAAGAAAAGTCTTGGTATTGATTCACGTAAAACTACATCTAGTGATAGTGACAGTGATGACCATGAGCCTGAAGTGCATGGTAAAAACTCAAGAGGGACAGAACAGGTCCGAAGGTCTATGCGTTCTCGCAAGATTGTCAACTATTCCATGGACAACATTGAAATTGAAGATACTGTTGCCTCATCTGATCCGAGCAATAAGACAGACTTGAATGGAGAGCAGGTAGATGAAATATTTTCTCGGGCGCATGGTGTTTGTGGCGATGCAGACTCTGGTTTCAGCAGACATAAGGAAAGCACAATAAGCCTTTCTTCAAAGAAGGATTTGTCTAGAAGCTATCTGGAATCTGGAGGGGGTTTATGTACTGATGAAAAACCTAGTCCAGCAGGAGCGAGCAATTGTGATAACCCTTGTGATGCCTACTACCTTCAAGCGGGAGGTGGATTTTGCCCAGATGAGGACGAGAGAGGTAGCAAACATAATGAAATTCATGACGACGACTACCTTAGAGTGGGAGGTGGATTTTGCCTTGATGAGGATGAGACAGGTAGCAAACGAAATGAAATTCATGATTTGGCAACTATAGTAGAGGATAGTGCAGAGCTTACTCGTGGTTCTTTTGGTTTTGTGAATGAGGCTGAATGTGATAATCATGTTACTTATCAATCAAGTTCAGTCAATAAAACATCTGGAGTTGAACTGCAAGATAGAGGGAAAACTAAACACGAGAGTGAGATGAATGCTCATGGCGATACTGAGAATGCTGCGGCAGCATTTAGCGCGATGCCTTTTCTAAGAAAGAAAAGGAGGAAGAGCTGA 5406 0.4262 MDVDAESDVTRVRRVGPTRRGGGAQWTTSEHGKANCLGGKTMGVKGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGEMVHNAHLLGFFRRICKLLFLRTKPVFVFDGGTPVLKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALKLKKLSDDVKNQRLKQNSDAKGKKKSDQVDLIGGDLGRNNGKEQDKIWGAEVDKNISKTTVTSCNQEELDAMLAASIVAEEDGLLAGKAPSGVVSLSEEEGDTDQEIILPELGAEVDLSVLAALPQSIQLDILSQLKGKKVEGLLKDSNNQNQFEVNESRGKGKGILLHEVDTVGCSSGSDDMVAKKYNQDKVDEMLAASILAEENEKLVNNASTSGGAFISEEEDYVNDEDEEMILPAMHGKVDPAVLASLPPSMQLDLLGQMRERLISENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGVVGGVQTSRIASEANREYIFSRSFTGDKQELTSTSLEKNKDTHQKTLGNHFSQGFVNNSDPANDSSTSSGLVCNEAVSPSDENIQTYLDERGQFRVSRLRAMGMRMTRDIQRNLDLMKEIELERTVANKAENNYAILSGEENVASKGSSNLLVGMSSGSNVDLVGDNSRNEHPSLAGDASLEISFMDDGDNKCPNDDHDLFASLVKGNSVVFSCADNNSLKEQVSDSSSDCDWEEGIVEGKSDVNVEMKPSVAKDNCNDESDVEWEGGVCDDANTTLCTVEAQKKTSRGCLEEEADLQEAIRRSLEVMGERKLNSTSSKHENSNADGYKSGYALNQDDNLVDSGVKRICGNSGVLNRDIGMGESTLQRECNTEHSESYDKIIDDKMDSTARSIKQVSQSPGGQSKSSVAFDSKKSVSLIKKPHSIEVGPHSEDLLYSANESTRNEIHMAAEQLLGTLNEDGKESTNGNKSPVVDSLGASEEEKKNCSYEAEPFGNYSEVPEPVAPFVNSFLEVLTEDLDTQPELPREENCGSFLKRKSNLGKDAMEPLGFLSAEDIETQSELPRKDNHGSFEESKNNLVKDAMKAPGHLSAGGIECGLEEEIRILGQEYTNLEYEQRKLERNAESVNNELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTIFGKFETKSGSSSRKKGSKVEENVTGTNCYIEETMVDQNVSHAQEHESSDDIHEIKQIFMNKHRNVSKNWHIPSSFPSETVISAYSCPQVDKSTDPFAWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKNETQLRLEAFYTFNERFAKIRSKRIKRAVKGITGNHSSEFTEESAEDLSKSGKNETGIPAELGISKSETFKGTGESPAEMKTLKSKQSRKRKNSVDTVAKTKTQSRKKGKLNAPASASGLPDVDVQTGEEPTQPSDGNGLSRNRSSKGRAKGSRVPTGRRKKSLGIDSRKTTSSDSDSDDHEPEVHGKNSRGTEQVRRSMRSRKIVNYSMDNIEIEDTVASSDPSNKTDLNGEQVDEIFSRAHGVCGDADSGFSRHKESTISLSSKKDLSRSYLESGGGLCTDEKPSPAGASNCDNPCDAYYLQAGGGFCPDEDERGSKHNEIHDDDYLRVGGGFCLDEDETGSKRNEIHDLATIVEDSAELTRGSFGFVNEAECDNHVTYQSSSVNKTSGVELQDRGKTKHESEMNAHGDTENAAAAFSAMPFLRKKRRKS 1801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1043 1801 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 764 783 IPR003903 -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 930 945 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 1405 1574 - -
Lele48g1043 1801 SUPERFAMILY PIN domain-like 43 1195 IPR029060 -
Lele48g1043 1801 CDD PIN_XPG_RAD2 43 133 - -
Lele48g1043 1801 SMART xpgn3 42 139 IPR006085 GO:0004518
Lele48g1043 1801 MobiDBLite consensus disorder prediction 863 882 - -
Lele48g1043 1801 Gene3D - 1180 1295 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 1497 1515 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 171 195 - -
Lele48g1043 1801 SMART HhH_4 1182 1215 IPR008918 GO:0003677|GO:0003824
Lele48g1043 1801 Pfam XPG N-terminal domain 42 138 IPR006085 GO:0004518
Lele48g1043 1801 MobiDBLite consensus disorder prediction 517 544 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 1763 1778 - -
Lele48g1043 1801 ProSitePatterns XPG protein signature 1. 111 125 IPR019974 GO:0016788
Lele48g1043 1801 ProSitePatterns XPG protein signature 2. 1114 1128 IPR019974 GO:0016788
Lele48g1043 1801 MobiDBLite consensus disorder prediction 783 802 - -
Lele48g1043 1801 FunFam DNA repair protein UVH3 1180 1237 - -
Lele48g1043 1801 CDD PIN_XPG_RAD2 1097 1181 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 930 952 - -
Lele48g1043 1801 Gene3D - 35 181 - -
Lele48g1043 1801 SMART xpgineu 1111 1180 IPR006086 GO:0004518
Lele48g1043 1801 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 42 295 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 518 544 - -
Lele48g1043 1801 FunFam DNA repair protein UVH3 1062 1179 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 1529 1570 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 862 882 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 171 189 - -
Lele48g1043 1801 Gene3D - 1044 1179 - -
Lele48g1043 1801 FunFam DNA repair protein UVH3 42 187 - -
Lele48g1043 1801 MobiDBLite consensus disorder prediction 1458 1472 - -
Lele48g1043 1801 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1180 1388 IPR036279 -
Lele48g1043 1801 PRINTS Xeroderma pigmentosum group G protein signature 137 159 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lele48g1043 1801 PRINTS Xeroderma pigmentosum group G protein signature 95 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lele48g1043 1801 PRINTS Xeroderma pigmentosum group G protein signature 43 60 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lele48g1043 1801 Pfam XPG I-region 1114 1195 IPR006086 GO:0004518
Lele48g1043 1801 MobiDBLite consensus disorder prediction 1757 1801 - -
Lele48g1043 1801 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 113 132 IPR006084 -
Lele48g1043 1801 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 65 79 IPR006084 -
Lele48g1043 1801 Pfam Ubiquitin binding region 402 425 IPR025527 -
Lele48g1043 1801 Pfam Ubiquitin binding region 271 293 IPR025527 -
Lele48g1043 1801 CDD H3TH_XPG 1183 1326 - -
Lele48g1043 1801 Coils Coil 1074 1101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1043 Lele-ChrLele48 15338464 15350691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1043 42 141 Core DNA Replication Machinery Family AT5G26680 38.182 3.00e-12 68.9