LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g1042	ATGTCAACGGTTAGCTCTAGTGCGGTTTCCAAGTCCGGTGACATCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTACTGGTGGTGGATGATGATCCCACGTGCCTCATGATACTTGAAAAGATGCTTCGCACTTGCCTCTACGAAGTTACGAAATGCAATCGAGCAGAGATTGCGCTGTCACTTCTGAGAGAGAACAAAAATGGGTTCGACGTTGTTATAAGCGATGTACATATGCCAGACATGGATGGCTTCAAACTCTTAGAGCACATTGGGTTAGAGATGGACCTTCCCGTTATTATGATGTCTGCAGATGATGGAAAGAATGTTGTTATGAAAGGTGTGACTCATGGTGCCTGTGATTACCTTATAAAACCTGTGCGCATCGAGGCTCTAAAGAATATATGGCAACATGTGATTCGTAAGAGAAAGAATGAATGGAAGGATTTGGAGCAGTCAGGTAGCGCCGAAGAAGGAGATCAGAAGCTAAAGCCTACTGATGAGGCGGACTACTCATCCTCTGCAAACGAAGGCCATTGGAGAAACGCAAAGAAGAGGAGGGATGAGGATGAAGAAGCAGAGGAGAGAGATGACTCATCCACGTTAAAGAAGCCACGAGTGGTTTGGTCAGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTGAATCAACTAGGAATTGATAAGGCAGTTCCTAAAAAAATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGCTTGTATCTTCGAAGGCTGAGTGGTGTTTCTCAACATCAGGGTAACCTGAATAGCTCTTTCATCAACTCACAAGAGGCAACTTTTGGGGCAATTTCTTCACTCAATGGAACGGATCTTCAAACTTTTGCTGCTGCAGGTCAGCTTCCACCACAAAGTCTAGCAACACTTCAAGCTGCAGGACTAGGTAGATCAACTGCAAAAACTGGGATGCCCATGCCCCTTGTTGATCAAAGGAACTTTTTCAGTTTTGAAAACCCAAGATTAAGATTTGGAGAAGGACAACAGCAATATGGGAGCAGTGGCAAACCAATGAACTTACTTCATGGCATCCCTACCAACATGGAGCCAAAGCAGCTTGCTTCTTTGCACCAATCTACTCAATCCCTAGGGGGCTTGAATATGCGAGTGAATGCTTCTCCTTGCCAGAGCAACCCCCTATTGATGCAGATGTCTCAATCACAACCAAGAGGTCACATGCTTGGTGAACATAATGTGTCTCAGGTTCCCAGGCTTCCAACATCTATGGGGCAGTCTTCGGTATCAAATGGGTCTCCCAGTAGTGTTCTGGGAAGAAATGCTATTCCTGATAATAGCAGAGGAGTTTCGTATAATCAAGTTTCACAATCCTCTTCAATGTTGAACTTTCCCATGAACCAAACCACAGAAATGCCTGCAAGTAGTTTTCCTCTCGGAAGCACTCCAGATATGTCAAGTATTGCGTCAAAAGGGGTTTGCCAAGATGGAGTTGGTTCAGGAATGAAAGGATCTTCTGGATTTGGTCCAAGTTATGATATCTTTAATGAACTGCACCAGCATAAGTCCCATGAATGGGGGGTGCACAACATGGGCCAGGGCCAGAGCCAGAGCCAGAGCCAGACATATGATGCCCCTCAACATGCAAATCCCTTACAAGGCAACATTGATGTCTCAGTTCTAGTCCATCAAGGTTTCTCTTCCAACCAACAGATTGGACATAATAGAGACGCTACTTCAGTTGGAAAAGCCATGTTCTCCCTAGGGGAAAGCATGGTGTCAGGTAATTTCCACAATACTGCTCAGCATCAGGGTGTCCAAAACACGCTTCCTACCGACAATTCTGTAAGGGTTAAGTCTGAAAGAATTCCTGATGCTAACTCTCTGACTAACCTTTTCCCTGAGCACTATGGGCAGGAGGATCTCATGAGTGCACTGCTTCTGAAACAGAAGGCATTGGACCAGCCGACAATGAGTTTGACTTTGATGGATATTCCTTGGACAACATCCCTGTCTAGAGCAGATGCTACCAGTTCTCTTTCAGATTGCAGTTGCCAATATACATATCTAGGGAGATACCCTGGCGCCGCCATGCAAGATAGTAGTGATTATGGGTCTGTCTATTTGATGCACTCATTTTCTCTTTCCCATTCTACAAGAAACTTGGATCGTCGAGAGATTTATATGATATGGGTGGCTTATCTTTCTAGAAGTGAATATGTGGATGTCTTTGTAGCTGTTGTTTTATGTTCTTTGGCTTCATGGAGTGCATTGGAGGGATGTTTTTGGAGGTTGAGGAATATATTCGTTGTGTCTTTTTGGTCGGAATATTCTGGTGGTTACCTTCCACGTAAGAATATAGATAATGGGATTGATAAGGATTGTGAAAGGCACTTACACTTTAGTAGTGGTGCCAACGTCACGAGGCACGTGTATAAAAAGAGGGCTTGTCCTTGGTATTGA	2484	0.4485	MSTVSSSAVSKSGDIVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALSLLRENKNGFDVVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNEWKDLEQSGSAEEGDQKLKPTDEADYSSSANEGHWRNAKKRRDEDEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNLNSSFINSQEATFGAISSLNGTDLQTFAAAGQLPPQSLATLQAAGLGRSTAKTGMPMPLVDQRNFFSFENPRLRFGEGQQQYGSSGKPMNLLHGIPTNMEPKQLASLHQSTQSLGGLNMRVNASPCQSNPLLMQMSQSQPRGHMLGEHNVSQVPRLPTSMGQSSVSNGSPSSVLGRNAIPDNSRGVSYNQVSQSSSMLNFPMNQTTEMPASSFPLGSTPDMSSIASKGVCQDGVGSGMKGSSGFGPSYDIFNELHQHKSHEWGVHNMGQGQSQSQSQTYDAPQHANPLQGNIDVSVLVHQGFSSNQQIGHNRDATSVGKAMFSLGESMVSGNFHNTAQHQGVQNTLPTDNSVRVKSERIPDANSLTNLFPEHYGQEDLMSALLLKQKALDQPTMSLTLMDIPWTTSLSRADATSSLSDCSCQYTYLGRYPGAAMQDSSDYGSVYLMHSFSLSHSTRNLDRREIYMIWVAYLSRSEYVDVFVAVVLCSLASWSALEGCFWRLRNIFVVSFWSEYSGGYLPRKNIDNGIDKDCERHLHFSSGANVTRHVYKKRACPWY	827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g1042	827	SUPERFAMILY	Homeodomain-like	201	261	IPR009057	-
	Lele48g1042	827	MobiDBLite	consensus disorder prediction	147	167	-	-
	Lele48g1042	827	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	24	387	IPR045279	GO:0009736
	Lele48g1042	827	CDD	REC_typeB_ARR-like	26	140	-	-
	Lele48g1042	827	FunFam	Two-component response regulator	200	263	-	-
	Lele48g1042	827	SUPERFAMILY	CheY-like	23	147	IPR011006	-
	Lele48g1042	827	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	204	257	IPR006447	GO:0003677
	Lele48g1042	827	Pfam	Myb-like DNA-binding domain	206	256	IPR001005	-
	Lele48g1042	827	SMART	REC_2	24	136	IPR001789	GO:0000160
	Lele48g1042	827	Gene3D	-	201	263	-	-
	Lele48g1042	827	Pfam	Response regulator receiver domain	26	134	IPR001789	GO:0000160
	Lele48g1042	827	ProSiteProfiles	Response regulatory domain profile.	25	140	IPR001789	GO:0000160
	Lele48g1042	827	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	203	260	IPR017930	-
	Lele48g1042	827	MobiDBLite	consensus disorder prediction	535	555	-	-
	Lele48g1042	827	Gene3D	-	24	159	-	-
	Lele48g1042	827	MobiDBLite	consensus disorder prediction	147	201	-	-
	Lele48g1042	827	MobiDBLite	consensus disorder prediction	179	201	-	-
	Lele48g1042	827	MobiDBLite	consensus disorder prediction	536	555	-	-
	Lele48g1042	827	FunFam	Two-component response regulator	24	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g1042	Lele-ChrLele48	15321865	15326306	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g1042	58	660	Response Regulator Gene Family	AT3G16857	47.458	2.30e-160	479

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Lele48g1042		Response_reg	8.1e-23	CL0304