Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1039 ATGTGCAATGTGACGAATTCAAAGCACAGGTTATCACATTTGATCGCTCTTCTAACATCCTCGTACTCCAGGAAGGTTCCAAATCCTGGACCTCATCGAACTATTCGGTTGTTGAAGACTAATTATATCAAAGATTTCACACTTTTAGGTCAAGCAGAAGACCCACTTGATCCAAAGAACTGCTTGCTTAACCTTAGTGCTCTCCAAGCTAGGGAAGAAGTATCAATTAGGTATTTATTGTGCTGTTTGGATTCTGAAATCAGGGTTCTGTTCAGATCCTTCGAAATAATGGTCGATCTGAGTGGTAAAGACACCAATAACAGAAACCCTAACGACGATTCATCTGACGAAAGCCCAATGAGCAACGAGCAGAAGAAAACCTGCGCCGACTGTGGCACATCAAAAACCCCTCTCTGGAGAGGCGGTCCCGCCGGGCCCAAGAGATCAACTGTGGAGAGGCAGAGGAAGAAGCTGGGAGAGGAAGAACAAGCCGCCGTTTTGTTGATGGCTCTCTCCTATGGCTCTGTTTATGCTTAA 537 0.4544 MCNVTNSKHRLSHLIALLTSSYSRKVPNPGPHRTIRLLKTNYIKDFTLLGQAEDPLDPKNCLLNLSALQAREEVSIRYLLCCLDSEIRVLFRSFEIMVDLSGKDTNNRNPNDDSSDESPMSNEQKKTCADCGTSKTPLWRGGPAGPKRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1039 178 ProSiteProfiles GATA-type zinc finger domain profile. 122 145 IPR000679 GO:0006355|GO:0043565
Lele48g1039 178 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 146 - -
Lele48g1039 178 Gene3D - 120 160 IPR013088 GO:0006355|GO:0008270
Lele48g1039 178 PANTHER OS01G0976800 PROTEIN 105 147 - -
Lele48g1039 178 MobiDBLite consensus disorder prediction 102 131 - -
Lele48g1039 178 MobiDBLite consensus disorder prediction 102 158 - -
Lele48g1039 178 Pfam GATA zinc finger 128 147 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1039 Lele-ChrLele48 15298425 15300896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1039 122 178 C2C2-Gata Transcription Factor Family AT5G49300 48.148 1.14e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele48g1039 GATA 1.1e-06 CL0167