Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1037 ATGAGTGCATCAGAAAACCCTCCACGTAAGTGTGAGACGAGAAAATCAAAATCTTCATCTTCTTCTTCAGCAAATCTGAAGCTATTCGGTTTCCCATTAAGCACAAGTTCTCGTGATGCTTTCATTTCCTCAAACAATAAGAGATTATTCAAATGCCATTTCTGTCAGCGAGAATTCTCTAATTCTCAAGCTCTTGGAGGCCACCAAAATGCCCATAAAAGAGAACGCCGTGAAGCTACTTTTGCTCATTTCGACAACCTTAGCAATCTTCATCTTCTGCCTCATCCTCATCGTCAACGGCTCCAGATCACTTCGTCATCATCGTCACTTGCTTCATCAGGACCATCGACACAGCTTGTTCATCACCATCAACCTTTTTTGTCCGAGCCTGAGCTTTGGTATGGAGTTCGATCGTACGACAACGACAGAGAGGCACGTGATGATGCTGAAAAAGAGTTATCGAGTGAAGAATCAGTACCAAATGGTGATGATGTTCTCGATCTTAACTTGAGTTTATAG 519 0.4258 MSASENPPRKCETRKSKSSSSSSANLKLFGFPLSTSSRDAFISSNNKRLFKCHFCQREFSNSQALGGHQNAHKRERREATFAHFDNLSNLHLLPHPHRQRLQITSSSSSLASSGPSTQLVHHHQPFLSEPELWYGVRSYDNDREARDDAEKELSSEESVPNGDDVLDLNLSL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1037 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Lele48g1037 172 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Lele48g1037 172 MobiDBLite consensus disorder prediction 143 158 - -
Lele48g1037 172 PANTHER ZINC FINGER PROTEIN 5 14 172 IPR044299 GO:0010090
Lele48g1037 172 MobiDBLite consensus disorder prediction 1 25 - -
Lele48g1037 172 Gene3D Classic Zinc Finger 33 108 - -
Lele48g1037 172 SUPERFAMILY beta-beta-alpha zinc fingers 46 77 IPR036236 -
Lele48g1037 172 MobiDBLite consensus disorder prediction 143 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1037 Lele-ChrLele48 15281173 15281691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1037 46 131 C2H2 Transcription Factor Family AT1G24625 44.186 2.64e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele48g1037 None None None