Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1031 ATGTTTTTTTCTTCTGTTTTTGGTATAGATGTGCTTATTTTTGGCCACACTAATCATATCCTTGGCTTTGATTACGCGCTGAGAGGGGGAATTCGGATTCTGTCGGAGGTTTCTATGATGGCAAACAACTTAACAGGGCGGCTACTGGGTTCAGAGATACATGGATTCCATACAATGCAGGAGTTGGATGTTGGAATTATTATGGAGGAAGCAAGACGCAGATGGCTTCGTCCCAATGAGATCCATGCCATACTCTGCAATTACAAAAATTTTACCATCCATGTCAAGCCAGTGACTTTGCCCCAAAGTGGTACTATTGTATTATTCGATAGGAAGAAGCTTAGGAACTTTCGTAAAGATGGTCACAACTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGTGAAGAAAACCAAAACTTTGTCCGCAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCATATTGTCCTTGTTCATTATCGTGAAACACAGGAGTCACAAGGTTCTCCAGCCGTAACTGTATATTCAAATGCTAGTTCTCCCTCTGATCCAACAACACCATGGATATTATCGGAAGAATTAGACTCTGGGATCAGCAAGGCATATGCTGGTGAGCTGAATGACAATTTAACTGTCAAAACTCATGAACTGAGGCTGCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTACAAATGATCTTAACACCTCTACTACTTCCACTCCTACTGGAGGAAAGGTTCCATGTTTTCATCAAGAGAAACAAATTTTACCGAATGGAAATTTGAGCAAGGTAGTCAACAATGAATCTGCAGAGATTCATTCTTTTGATATTCTGAACACTTCAGTTGATGGGAACAATAGTGCTCAATACAACTTTCCTGAAAGTTTGAACCTTCAGACAGCCAACAGTCAATTAAATTCAAATGTACATAGTGAACATTCTATCACCATGGGTGGTGGCAATTTTGTGGACAATATTATCAATGACACTCTGCAAAGCCAGGACAGCTTTGGAAAATGGATAAGCCATATGATAGCTGATTCACCATGTTCTATTGATGACTCAGGTCTTGAATCCTCAGTTTCATCTGTTCATGATTCATACTCTTCAGGATTGGATAGTAATCAGCCTTCTCTGGCAGAACAAATATTTAATATAACTGATGTGTCTCCTGTCTGGGCATGCACCACTGAGAAAACAAAGGTCCTAATAACTGGATTTTTTCATGATGACTATATGCACCTTGCGAAGTCCAATTTGTTTTGTATCTGTGGGGATGTACCTGTTCCTGTAGAAATTGTTCAAGTTGGTGCCTACCGGTGCTGGGTACCACCACATTCCCCTGGTTTTGTGAATCTCTCTATGAGTATTGATGGCCACAAGCCCATAAGTCAAGTTGTTAATTTTGAGTATCGAACTACTGTTTTGCAAGAACCTGCAGCTTCCATAGAAGAGAGGCACAACTGGGAGGAGTTTCGACTTCAGATGAGGCTTGCACATTTGCTCTTTACTACACAAAAGAGTCTTGACATTACCTCTAGCAAAGTATCCCTTCATGCACTGAAGGAGGCTGAGAAATTTGTCTCCAAGACATTATATATTTCCAAACGTTGGCAATACTTGATTAAGTCTACTGAAGACAACAAAACACCATTTCCACAAGCAAAAGATGCCTTGTTTGAAATTGCATTGAAGACTAAACTAAAGGAATGGCTGCTGGAGAGAATTATTTTAGGTTGTCAGACTACTGAATTAGATGCCCAAGGTCAAGGTGTAATCCATTTGTGCTCAATTTTGGGATATACATGGGCTGCTTCATTATTTTCATGGTCTGGTTTTTCATTGAATTTCCGTGATAAATTTGGATGGACAGCCCTGCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTTGCCGCTCTATTGTCTGCAGGGGCAAGGCCAAATTTGGTCACGGATCCTACTTCTCAACATCCTAAGGGATTTACTGCTGCTGATCTGGCTCAGATGAAGGGTTATAATGGCTTAGCAGCTTATCTTTCGGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCCTAGCAGGGAATATCAGTGGCTCGCTGGAAACTACTAGCGCAAGTGATCCCGTAAATTCTGAGAAGCTCAGTGATGATCAGCTGTATATGAAGGACACATTAGCAGCTTATCGGACAGCTGCTGAGGCTGCAGCTCGCATACAAGCTGCATTTAGGGAGCACTCACTAAAATTACGATCTCATGAAGTTGAACTTTTCAGTCCAGAAGCTGAAGCACGCCAAATAGTTGCAGCAATGAAGATCCAGCATGCTTTTCGAAACTTTGAGTCGAGGAAGTCTATGGCAGCTGCTGCTCGCATCCAGCATACCTTCCGTACGTGGAAGATGCGTAGAGAATTTCTCAATATGCGTCGCCAGGCAATCAAAATTCAGGCTGCTTTCCGGGCCTTCAAGGAGCGGAAGAACTACCGCAAAATCATCTGGTCTGTTGGAGTGGTTGAGAAAGCAATCCTACGGTGGCGTTTAAAGAGAAAGGGCTTCCGTGGCCTACATGTCAATCCTGTCCAAGAAATGGTAGGTCAGAAGGACGAAGCAGAGTTCGTTACCGAGGAAGACTTTTTCCGGATTGGCAGGAAACAAGCTGAAGAACGTGTTGAGAGAGCTGTGGTACGTGTCCAGGCTATGTTCCGCTCTAAGAAAGCACAAGTAGATTACAGGAGGATGAAAATAGCCCATAATCAAGCAAAGCTGGAACTAGAATATGAAGACCTCCTCAATTCTGAGGTTGATATGGGAGTGAAGACATAG 2898 0.4217 MFFSSVFGIDVLIFGHTNHILGFDYALRGGIRILSEVSMMANNLTGRLLGSEIHGFHTMQELDVGIIMEEARRRWLRPNEIHAILCNYKNFTIHVKPVTLPQSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEENQNFVRRCYWLLDKSLEHIVLVHYRETQESQGSPAVTVYSNASSPSDPTTPWILSEELDSGISKAYAGELNDNLTVKTHELRLHEINTLEWDDLVVTNDLNTSTTSTPTGGKVPCFHQEKQILPNGNLSKVVNNESAEIHSFDILNTSVDGNNSAQYNFPESLNLQTANSQLNSNVHSEHSITMGGGNFVDNIINDTLQSQDSFGKWISHMIADSPCSIDDSGLESSVSSVHDSYSSGLDSNQPSLAEQIFNITDVSPVWACTTEKTKVLITGFFHDDYMHLAKSNLFCICGDVPVPVEIVQVGAYRCWVPPHSPGFVNLSMSIDGHKPISQVVNFEYRTTVLQEPAASIEERHNWEEFRLQMRLAHLLFTTQKSLDITSSKVSLHALKEAEKFVSKTLYISKRWQYLIKSTEDNKTPFPQAKDALFEIALKTKLKEWLLERIILGCQTTELDAQGQGVIHLCSILGYTWAASLFSWSGFSLNFRDKFGWTALHWAAYYGREKMVAALLSAGARPNLVTDPTSQHPKGFTAADLAQMKGYNGLAAYLSEKSLVEQFNDMSLAGNISGSLETTSASDPVNSEKLSDDQLYMKDTLAAYRTAAEAAARIQAAFREHSLKLRSHEVELFSPEAEARQIVAAMKIQHAFRNFESRKSMAAAARIQHTFRTWKMRREFLNMRRQAIKIQAAFRAFKERKNYRKIIWSVGVVEKAILRWRLKRKGFRGLHVNPVQEMVGQKDEAEFVTEEDFFRIGRKQAEERVERAVVRVQAMFRSKKAQVDYRRMKIAHNQAKLELEYEDLLNSEVDMGVKT 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1031 965 SMART iq_5 813 831 IPR000048 GO:0005515
Lele48g1031 965 SMART iq_5 790 812 IPR000048 GO:0005515
Lele48g1031 965 SMART iq_5 832 854 IPR000048 GO:0005515
Lele48g1031 965 SMART iq_5 914 936 IPR000048 GO:0005515
Lele48g1031 965 ProSiteProfiles IQ motif profile. 916 944 IPR000048 GO:0005515
Lele48g1031 965 SUPERFAMILY Ankyrin repeat 593 707 IPR036770 -
Lele48g1031 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 755 860 IPR027417 -
Lele48g1031 965 Gene3D Immunoglobulins 403 499 IPR013783 -
Lele48g1031 965 ProSiteProfiles Ankyrin repeat profile. 645 677 IPR002110 GO:0005515
Lele48g1031 965 ProSiteProfiles IQ motif profile. 791 820 IPR000048 GO:0005515
Lele48g1031 965 SMART ANK_2a 645 674 IPR002110 GO:0005515
Lele48g1031 965 ProSiteProfiles Ankyrin repeat region circular profile. 645 673 - -
Lele48g1031 965 FunFam calmodulin-binding transcription activator 5 575 715 - -
Lele48g1031 965 Pfam IQ calmodulin-binding motif 835 854 IPR000048 GO:0005515
Lele48g1031 965 Pfam Ankyrin repeats (many copies) 647 693 IPR002110 GO:0005515
Lele48g1031 965 ProSiteProfiles CG-1 DNA-binding domain profile. 64 190 IPR005559 GO:0003677
Lele48g1031 965 Pfam CG-1 domain 70 183 IPR005559 GO:0003677
Lele48g1031 965 SMART CG_1_2 67 185 IPR005559 GO:0003677
Lele48g1031 965 Gene3D - 809 857 - -
Lele48g1031 965 ProSiteProfiles IQ motif profile. 810 839 IPR000048 GO:0005515
Lele48g1031 965 Gene3D - 573 714 IPR036770 -
Lele48g1031 965 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 63 944 - -
Lele48g1031 965 ProSiteProfiles IQ motif profile. 833 857 IPR000048 GO:0005515
Lele48g1031 965 SUPERFAMILY E set domains 409 496 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1031 Lele-ChrLele48 15235270 15245790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1031 67 948 CAMTA Transcription Factor Family AT3G16940 54.218 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lele48g1031 CG-1 2.4e-46 No_clan