LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g1030	ATGTTAGTTTTACTTTTGAGACTTGCATATTTCTGTTGGGAAATTTTGTGGTTAAACTTGTGCTGTAATGCAGTTTATATTGGTTACCAAAATGGCAGGACTTATAGTGACTCTAGCTTTCATGTTCGCCCAAATGATGTTCCTATGGAAGTTTTCACTTTCTCTGAGGAGAACACCTCCGCTGTTGCTCCTGCCACTCTCTACAAAGCTCTCGTCTTTGATGGCGACAACCTCATCCCCAGGTTTGTCGATGCCGTCCAGAGCGTTGACATCCTCGAAGGCACTGGTGGCGCAGGAACCATCAAGAAGATCAACTACCTCAAAGGTCGGTGTGCAGCTTGCAAGAATCAAAGAAGAAAGTGTCCTTCAGATTGCATTTTCTCTCCCTATTTTCCTCCCAATGATCCTGAAAGATTCGCTTGTGTTCATAGAATATATGGTAGCAGCAACGTTGGAAAAATGCTTCAGCAAATTCCAGTGCAAATGAGAGCACAAGCAGTGGATACATTATATTTTGAAGCAAGATGCAGAATGGAAGATCCTGTATATGGTTGTGTTAAGCTTATTTCTCAGTTACATCAGAACTTGCATGATACAGAAAGTGAACTAGCAAGAATTCAAGCTCTTGTTGCATGCCACAAGCTCCAAATTTCACAAGTTGAACTTCACCAACCTAATTTGGATGCATCACAAAGCAATATGGAGCAGTTTCAGTTCAATTATTCTACTCAGAATCCAACTTGGTTTATTAATTAA	756	0.4074	MLVLLLRLAYFCWEILWLNLCCNAVYIGYQNGRTYSDSSFHVRPNDVPMEVFTFSEENTSAVAPATLYKALVFDGDNLIPRFVDAVQSVDILEGTGGAGTIKKINYLKGRCAACKNQRRKCPSDCIFSPYFPPNDPERFACVHRIYGSSNVGKMLQQIPVQMRAQAVDTLYFEARCRMEDPVYGCVKLISQLHQNLHDTESELARIQALVACHKLQISQVELHQPNLDASQSNMEQFQFNYSTQNPTWFIN	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g1030	251	Coils	Coil	189	209	-	-
	Lele48g1030	251	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	110	235	-	-
	Lele48g1030	251	SUPERFAMILY	Bet v1-like	52	109	-	-
	Lele48g1030	251	Pfam	Lateral organ boundaries (LOB) domain	110	207	IPR004883	-
	Lele48g1030	251	PRINTS	Major pollen allergen Bet V1 signature	74	84	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Lele48g1030	251	PRINTS	Major pollen allergen Bet V1 signature	97	106	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Lele48g1030	251	PRINTS	Major pollen allergen Bet V1 signature	51	71	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Lele48g1030	251	Gene3D	-	49	123	IPR023393	-
	Lele48g1030	251	Pfam	Pathogenesis-related protein Bet v 1 family	49	109	IPR000916	GO:0006952
	Lele48g1030	251	ProSiteProfiles	LOB domain profile.	109	210	IPR004883	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g1030	Lele-ChrLele48	15230165	15234410	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g1030	110	221	AS2 family	AT3G26660	60.714	2.33e-49	156

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Lele48g1030		LOB	7.4e-36	No_clan