Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1011 ATGACAGGCTCATCGTCACCCAGAAAAGCTCCGAAGCCCCGACGAGAAAGAGCCAAGAAAACGACGAACTTTGTGAGAAAAGTTCGAGTGATATACACAGACCCAGATGCTACAGATTATTCAAGCGAAGAAGAAGCTGGTGGCGGCTCCTCCAAGAGATTTGTGAAGGAAATTCTTGTTCCGACCAAATCATGCGACGAAGGAGGAATAAACCTCAAAGAAGCGGGTCCCAGTAGTTTTGTCGCCAGCGCCAGCACCAGCACCAGCGCTGCCGGCGGGAGCAGTCGTCGGAAACCATCAGGGTTGCCGAGAGGGGTACGACGTCGTAAATGGGGGACGTACGTGGCGGAGATCCGAGACCCGTTTTACAAGGTCCGAAGGTGGCTGGGGACATTCTATACTGTGGAAGAAGCTGCTTTGGCTTACGAGACGATGAAGAAGGAATATGAAAGCACGTCGAGGTCCCGTTCATCTCCATCATCTGTGCTCGAAGCCACTTCTAATAATAATAATAATAACAACAGTAAAACTAATTCAGTGGCTAGTGACAGTGACGGTTCTGCGAAAGAGATGAAGAATGTGAAAGAAGAACAGTTTTCTGGGGAAGAAGATGAAGAAGAAGGTTACATGCAGTATTTATTGGAGGAGCCAATCATGCCATCATTGGATGATGATACAGGAATGGTGTTTGCTGGAGGTGAATCTGATAATAATAATGTGGGGATTAATAGTAATGATGATGATAATGATGATGCTGATAATGGAGATTTGATCTTCGAGGAGAATAAGGAAGAAGGAAGAATCATCAGCACTGTTCCATTGTCTGTTGAAAGTGATGATTCAAGTGATGATACAGAGTTAGCTTGGATTGATGAAGCTCTCATTAATGATGAAGATGAAGAATGGCCTTAG 912 0.4529 MTGSSSPRKAPKPRRERAKKTTNFVRKVRVIYTDPDATDYSSEEEAGGGSSKRFVKEILVPTKSCDEGGINLKEAGPSSFVASASTSTSAAGGSSRRKPSGLPRGVRRRKWGTYVAEIRDPFYKVRRWLGTFYTVEEAALAYETMKKEYESTSRSRSSPSSVLEATSNNNNNNNSKTNSVASDSDGSAKEMKNVKEEQFSGEEDEEEGYMQYLLEEPIMPSLDDDTGMVFAGGESDNNNVGINSNDDDNDDADNGDLIFEENKEEGRIISTVPLSVESDDSSDDTELAWIDEALINDEDEEWP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1011 303 SUPERFAMILY DNA-binding domain 103 149 IPR016177 GO:0003677
Lele48g1011 303 MobiDBLite consensus disorder prediction 154 186 - -
Lele48g1011 303 Pfam AP2 domain 104 151 IPR001471 GO:0003700|GO:0006355
Lele48g1011 303 MobiDBLite consensus disorder prediction 1 23 - -
Lele48g1011 303 CDD AP2 104 142 IPR001471 GO:0003700|GO:0006355
Lele48g1011 303 MobiDBLite consensus disorder prediction 66 110 - -
Lele48g1011 303 MobiDBLite consensus disorder prediction 78 95 - -
Lele48g1011 303 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Lele48g1011 303 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Lele48g1011 303 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Lele48g1011 303 Gene3D AP2/ERF domain 104 156 IPR036955 GO:0003700|GO:0006355
Lele48g1011 303 MobiDBLite consensus disorder prediction 146 256 - -
Lele48g1011 303 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 187 - -
Lele48g1011 303 SMART rav1_2 104 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1011 Lele-ChrLele48 15121701 15122612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1011 22 151 AP2-EREBP Transcription Factor Family AT1G68550 41.481 7.62e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele48g1011 AP2 1.8e-07 CL0081