Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1006 ATGCCTCTCTTTTACTATGGCCTGGCAGTCGTAGGAACAGCAGCCGTAATATTAGCAGTTTACAACCTTATCATCATCAAACGATGCGGCGGTGGCGGCCGCCGCCACACACAATCATCGTCTCCATCTTCTTCTTCTTCATCATCTCAGCCCGCAAATCGTGTGACTCATGAAGCAGTGGTACCCATCAGTAGGGGTTTTGATATAAGATTGAACAGAAACATGTTACTGTCAAGCTTCAAGTACAAGAAAGAAGCAGAAGAAGGAGACTGTGAATGCCCAGTTTGTCTTTGTGTGTTTGAAGAAGGAGAAGAAGTGAGGAAGTTACCGAGGTGTAAGCATACGTTTCATGCACTGTGCATAGACATGTGGCTCTTCTCTCACTTCGATTGCCCAATTTGTCGAACACCTGCGCTGCACTTTTGCCAGCTTTTTCGGCCACCGCCGCCGCCAAGTTCTGGTGATGAAGGCTTGCTCGGATCCGCCATTAATGGCGTCGCTGTTTGA 507 0.4813 MPLFYYGLAVVGTAAVILAVYNLIIIKRCGGGGRRHTQSSSPSSSSSSSQPANRVTHEAVVPISRGFDIRLNRNMLLSSFKYKKEAEEGDCECPVCLCVFEEGEEVRKLPRCKHTFHALCIDMWLFSHFDCPICRTPALHFCQLFRPPPPPSSGDEGLLGSAINGVAV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1006 168 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Lele48g1006 168 MobiDBLite consensus disorder prediction 34 55 - -
Lele48g1006 168 SMART ring_2 93 134 IPR001841 -
Lele48g1006 168 Pfam Ring finger domain 92 135 IPR001841 -
Lele48g1006 168 MobiDBLite consensus disorder prediction 33 55 - -
Lele48g1006 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 141 IPR013083 -
Lele48g1006 168 SUPERFAMILY RING/U-box 80 141 - -
Lele48g1006 168 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 136 IPR044675 -
Lele48g1006 168 CDD RING-H2_EL5_like 92 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1006 Lele-ChrLele48 15088389 15088895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1006 8 135 C3H Transcription Factor Family AT5G17600 38.346 1.40e-18 79.7