Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1002 ATGCCGGTGAATCTCACTCCCAACGCGATCCCGGCGATTGTGGCCGGCGACGTGAACTCGAAGCCGCTCGTCCAGGTCCTCGACATCAAGTTGCTTTCTAATTCGCAGCAGGAGAGGTACCGGCTTCTGCTTTCCGATTCCGCTTCCACTCAGCACGCTATGCTCGCGAGTCAGCTGAACGACCGAGTTAGAACCGGACGAGTCAAGAAAGGTTCCGTCGTTCAGCTGGTTGAGTACATCTGCAGTCAAATTCAGAACCGCAAGATCATTGTAGTGCTCAACATGGAAACTATAATTCCAGAGTGTGAGATTATTGGGAACCCAAACTCATTCATGGAATCTGATTCAACAGGTCAGAAAGCATTGTCTAATAACAATATGCAGAACTCATCCAGGCTTAATACTAATCGTCTGCCTGCTCAAAATTCAAGTCATGAGCAGAATTTCAGACCAACTGTTCAACCTCCATTCCGACCACCACCAGTTTACAGAGGTCATGGTGCAATTATGAAGAATGAAGCACCTGCGCGGATCATTCCTATTGCTGCTTTAAATCCTTATCAAGGCCGGTGGGCTATTAAGGCAAGAGTAACTGCAAAAGGGGATCTCCGCCGCTACAATAATGCTCGAGGAGATGGAAAAGTGTTCTCTTTTGATCTTCTTGACTCTGATGGAGGTGAAATACGAGTAACTTGCTTCAATGCTGTTGTTGACCGATTTTATGATGTAATTGAGGTTGGTAGAGTTTACTTGATATCCAAAGGTAGCTTAAAACCTGCAAAGAAGAATTTCAATCATTTGAAGAATGACTGGGAAATCTTCCTGGACTCTAATTCATCTGTGGAGCTTGGCCCAGATGAAGATGCTTCAATACCCAGACAACAATTCTCTTTTAGGCCTATCAGTGACATTGAGAATGCCGAAAGTAACTGCATACTTGATGTTATTGGGGTTGTGACATCTGTAAATCCCTCTGTTCCCATCTTGAGGAAGAATGGAACGGAAACTCAAAGAAGAATTCTGAATGTAAAGGACAAGTCTGGCAGGAGTGTTGAGCTCACCCTTTGGGGTGATTTCTGCAATAGGGAAGGTCAAAAGCTTCAAGAGATGGTTGATGGTGGGTTTTTCCCAGTTCTGGCAATCAAATCTGGGAGGGTTAATGACTTTAGTGGAAAATCTATAGGAACCATTTCTTCTACCCAGCTCTTTATTAACCCAGATTTTCCTGAGGCTCATAGATTAAGAGACTGGTTTGATCAAGGGGGGAAAGATTCAGCTTCTTTGTCCATTTCTAAGGACATTACGCCTGGAGGGCCTAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAAGATGAAGGCCTGGGGCGATCAGATAAGCCAGACTGGATAACGGCAGCCGGAACATGGAATTTAAGAATTGGAAAAAGTTTCAGCTCAGTTGTTGGAGAAGTGTGA 1458 0.4444 MPVNLTPNAIPAIVAGDVNSKPLVQVLDIKLLSNSQQERYRLLLSDSASTQHAMLASQLNDRVRTGRVKKGSVVQLVEYICSQIQNRKIIVVLNMETIIPECEIIGNPNSFMESDSTGQKALSNNNMQNSSRLNTNRLPAQNSSHEQNFRPTVQPPFRPPPVYRGHGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDVIEVGRVYLISKGSLKPAKKNFNHLKNDWEIFLDSNSSVELGPDEDASIPRQQFSFRPISDIENAESNCILDVIGVVTSVNPSVPILRKNGTETQRRILNVKDKSGRSVELTLWGDFCNREGQKLQEMVDGGFFPVLAIKSGRVNDFSGKSIGTISSTQLFINPDFPEAHRLRDWFDQGGKDSASLSISKDITPGGPKNEIRKTVSQIKDEGLGRSDKPDWITAAGTWNLRIGKSFSSVVGEV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1002 485 FunFam Replication protein A subunit 4 112 - -
Lele48g1002 485 Gene3D - 289 429 IPR012340 -
Lele48g1002 485 PANTHER REPLICATION FACTOR A 1, RFA1 191 466 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele48g1002 485 Pfam Replication protein A OB domain 301 405 IPR031657 -
Lele48g1002 485 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Lele48g1002 485 Gene3D - 3 112 IPR012340 -
Lele48g1002 485 CDD RPA1_DBD_A 180 283 - -
Lele48g1002 485 Pfam OB-fold nucleic acid binding domain 192 264 IPR004365 GO:0003676
Lele48g1002 485 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Lele48g1002 485 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 469 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele48g1002 485 SUPERFAMILY Nucleic acid-binding proteins 295 423 IPR012340 -
Lele48g1002 485 FunFam Replication protein A subunit 177 286 - -
Lele48g1002 485 MobiDBLite consensus disorder prediction 422 442 - -
Lele48g1002 485 Gene3D - 176 286 IPR012340 -
Lele48g1002 485 MobiDBLite consensus disorder prediction 113 156 - -
Lele48g1002 485 MobiDBLite consensus disorder prediction 113 151 - -
Lele48g1002 485 CDD RPA1_DBD_B 312 419 - -
Lele48g1002 485 CDD RPA1N 9 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele48g1002 485 FunFam Replication protein A subunit 290 429 - -
Lele48g1002 485 Pfam Replication factor-A protein 1, N-terminal domain 5 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1002 Lele-ChrLele48 15077723 15080884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1002 26 478 Core DNA Replication Machinery Family AT2G06510 69.767 0.0 676