Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0986 ATGGCTTTCGGGTTGGACTCTCACGATGTCTCCGCCTTCAAATTCTTGTTGTTCATGGCGGTCTTGTACGGTCTTTTGTCGTTGCTGGCTCATTCTGTCACTCATATGAAGTTTATTAAGCCACTTGAATTGGACGCCCCTGCCGATCGCTTTTCGGAAGCCAGAGCCATCGAACATGTACGAGTCTTGTCGAAAGAGATCGATGGTCGTCAAGAAGGACGTCCTGGATTGAGAAAAGCTGCTGAATATATCAAGGGTCAGTTAGAAGTAATAAAGGAGCGAGCTAGGTCCAGTGTCAGAATTGAGATTGAGGAAACCACTGTAAATGGCTCTTTTACTATGATCTTTTTGCAGCATGGCATAGCTCTGGGATACAGAAACCATACAAATATTATTATGAGGATATCATCTAAAGATTCGAAAGACACTGATCCATCAGTTTTAGTGAATGGACATTTTGATAGTCCACTTGGTTCCCCAGGCGCTGGAGATTGTGGTTCATGTGTTGCATCAATGCTGGAATTGGCACGACTAATTGTGGACTCTGGCTGGGCTCCAACCCGCCCTGTTATATTCCTCTTTAATGGCGCTGAGGAACTCTTCATGTTGGGTGCACATGGGTTCATGAAGACACATAAGTGGCATGATACAATTGGAGCTGCTATAAATGTGGAGGCATCTGGGACTGGAGGACCTGATTTAGTTTGCCAATCTGGACCTGGTTCTTGGCCTTCTAATGTCTATGCTGAATCAGCAATATATCCTATGGCTAATAGTGCAGCGCAGGATGTTTTTCCTGTTATTCCTGGAGATACAGATTACCGGATATTTTCCCAAGACTATGGGAATATTCCTGGGCTTGACATCATCTTTCTTCTTGGTGGTTATTTTTACCATACCTCCTATGATACAATAGAGAGATTGCTACCTGGAAGCATCCAAGCACGTGGTGACAATTTGTTCAGCATAATCAAAGCTTTTGCTAATTCCTCTAAGCTAAGAAATATCTATCAAACAAATTCTAGGGAAGTTACTGCAAACACATATGAAGATGAGCGGGCAGTTTTCTTTGACTATCTCTCATGGTTTATGATATCCTATTCCAGAAAAGTAGCTTGGATTCTTTACAGTGTTCCTATCTTCACCTTCTTTATCATGCCTTTCTTCTTGACACATAGTCGATCACGCTCATGGTCAGCAACTTCTTGTGATTTTATGAAAGGCTTTCTAATTCATACTGTAGGGATTATATTGGGGATTGTTGTTCCGATCATATTTTCTTTAATTAAAATTCAGTTCTCTTCTCAGACCATGAATTGGTTTGCACGCCCGTACTTGGCTTTCATGATGTATATACCCGGCTCACTTATTGGTCTTTTAATTCCGAGAATAGTTTGGAGACAATTTCCTCTGACTCAAGATATTTTAGTTACCAAGACTTCAAAAGAGGCACTATCTGATGAAGGAAGGTTCTGGGGAGCATTTGGATTTTATGCTGTATTTACTGTGGCTTACCTTGGTGCTGGGTTGAATGGAGGTTTCTTAACTTTTGTGATGTCAACTTTCATGCTTACTGCATGGATATCGTTCAGCTTATCAGTGAAATCCTGTGGACGCCAATCTCTCAGGTATGCTTTCATTCCATTCCTGTCAACAATATTTTACATGATACCTCTGGTTCCATGCCTTGCATACACCGTTTATTTTGGTGGCTTTTTATCTGAGTTTGTAATTGAAAAGATGGGAATGATGGGTGCTCTTCCTCTGCCCTGGGGGGAATACGTGCCTGACTTTGCTGTAGCTGCACTAGTTGGAATTGTAACTGGTTGGTGCTTGGGCCCTCTCTTACCTATTTGTGGCCATTGGTTAGCCAGAAAATCAATCTTGCAATTTCTGCTGCATCTTAGTGTGCTTGCTTTCGCATTGTCATCTCAGTTCTTTCCTTACAGCATTTCTGCACCTAAGAGGGTTGTTTTCCAACATACTTTTCATACTGCAGGCTCAAGTGAGATTGTGGAAGCCACTTATGATTTTTCTGTGGTGGATTCCAATTCTTTACTTTTCCTTTTCAGACACGCACCTGAAGTAGCAAGGGAGTTGGAAGCAATTTTTCCTGTTTCTTTTCTCTTTTCAAATAGCCTGAAGTTCCCTGCTAAAGGGGATGATATATTGGAGAAGTACGAATCTTTTCCCAATTTGTCTGTTCAGAAGTCTTGTACTAACTCTACAAAGGGACTGAAGAGAGTTTACTTGGAGCTTTCTTTAGGTTCCTTAGAAGAGGTCTGGGTTGCTGTTCTCAACATAACTGGTCCTTTATCCAGCTGGTCATTTGCTGATAATGTTCTTCCAGCTGATGGCGGTCCACCTTCATATATATTGCGACTTAGCGGCGCCAGTGACGAGAATTGGAACTTCTGGTTAGAGGCTAACAATTCTCAAGCATTAAGAGTGGACCTCGCCGTATTAGACCAAAAATTGGTTGAACCAGCAAAGAAACTGAAGGGTCTTTTCCCAGAGTGGGTTGATGTCGTTGCCTATTCTAGTTTTTTGTCAATCGTATCTTATAAGAAGAACAAATCACGGAGCAATTTTCTTCTACCCACCGAAGGCCATCGGCGAGGCGAGAGAGAAGCTCCCATAACAGGCGCCATGGTGAAGTACTCCAGGGAGCCGGACAATCCTACTAAGTCCTGCAAGGCTAGAGGCTCCGACCTCAGAGTTCATTTCAAGAATACTCGAGAGACTGCCTTTGCCATCAGGAAGTTGCCCTTGGCAAAGGCTAAGAGGTACTTGGAGGATGTTCTAGCACACAAGCAAGCCATTCCATTCCGAAGGTTTTGTGGTGGAGTTGGTAGGACAGCCCAAGCTAAGAATAGACACTCCAATGGGCAAGGGCGCTGGCCTGTTAAATCAGCTAAATTCATTCTAGACTTGCTTAAGAATGCTGAGAGTAATTCTGAAGAGAAAGGTTTGGATGTCGATGCCCTCTACATTTCCCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGGCGCACCTACCGAGCTCACGGAAGGATCAACCCTTATATGTCATCTCCCTGCCATATTGAGCTTATATTATCTGAGAAGGGAGAACCTGTGAGGAAGGAGCCGGAGACCCAGTTGGCCACTAGCAAGAAAGCCTAA 3168 0.4318 MAFGLDSHDVSAFKFLLFMAVLYGLLSLLAHSVTHMKFIKPLELDAPADRFSEARAIEHVRVLSKEIDGRQEGRPGLRKAAEYIKGQLEVIKERARSSVRIEIEETTVNGSFTMIFLQHGIALGYRNHTNIIMRISSKDSKDTDPSVLVNGHFDSPLGSPGAGDCGSCVASMLELARLIVDSGWAPTRPVIFLFNGAEELFMLGAHGFMKTHKWHDTIGAAINVEASGTGGPDLVCQSGPGSWPSNVYAESAIYPMANSAAQDVFPVIPGDTDYRIFSQDYGNIPGLDIIFLLGGYFYHTSYDTIERLLPGSIQARGDNLFSIIKAFANSSKLRNIYQTNSREVTANTYEDERAVFFDYLSWFMISYSRKVAWILYSVPIFTFFIMPFFLTHSRSRSWSATSCDFMKGFLIHTVGIILGIVVPIIFSLIKIQFSSQTMNWFARPYLAFMMYIPGSLIGLLIPRIVWRQFPLTQDILVTKTSKEALSDEGRFWGAFGFYAVFTVAYLGAGLNGGFLTFVMSTFMLTAWISFSLSVKSCGRQSLRYAFIPFLSTIFYMIPLVPCLAYTVYFGGFLSEFVIEKMGMMGALPLPWGEYVPDFAVAALVGIVTGWCLGPLLPICGHWLARKSILQFLLHLSVLAFALSSQFFPYSISAPKRVVFQHTFHTAGSSEIVEATYDFSVVDSNSLLFLFRHAPEVARELEAIFPVSFLFSNSLKFPAKGDDILEKYESFPNLSVQKSCTNSTKGLKRVYLELSLGSLEEVWVAVLNITGPLSSWSFADNVLPADGGPPSYILRLSGASDENWNFWLEANNSQALRVDLAVLDQKLVEPAKKLKGLFPEWVDVVAYSSFLSIVSYKKNKSRSNFLLPTEGHRRGEREAPITGAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNSEEKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKGEPVRKEPETQLATSKKA 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0986 1055 FunFam 60S ribosomal protein L17 884 1055 - -
Lele48g0986 1055 Gene3D Ribosomal protein L22/L17 884 1055 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele48g0986 1055 CDD M28_Fxna_like 48 367 - -
Lele48g0986 1055 Pfam Peptidase family M28 130 320 IPR007484 -
Lele48g0986 1055 SUPERFAMILY Zn-dependent exopeptidases 40 330 - -
Lele48g0986 1055 TIGRFAM uL22_arch_euk: ribosomal protein uL22 887 1037 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele48g0986 1055 ProSitePatterns Ribosomal protein L22 signature. 1010 1034 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lele48g0986 1055 PANTHER METALLOPEPTIDASE M28 FAMILY MEMBER 41 702 IPR045175 GO:0006508|GO:0008235
Lele48g0986 1055 FunFam Endoplasmic reticulum metallopeptidase 1 45 343 - -
Lele48g0986 1055 Gene3D Zn peptidases 45 346 - -
Lele48g0986 1055 SUPERFAMILY Ribosomal protein L22 884 1037 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele48g0986 1055 Hamap 50S ribosomal protein L22 [rplV]. 883 1037 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele48g0986 1055 CDD Ribosomal_L22 898 1034 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lele48g0986 1055 Pfam Ribosomal protein L22p/L17e 900 1035 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0986 Lele-ChrLele48 14924109 14938679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0986 884 1054 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.719 3.10e-106 327