Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0983 ATGGATATTGCGGAGATTGAAGAGAATATGTTCGCAGCAAGTGATGCAAAGTTACACGGAGAATTGTGTAAGGCTCTCTCAGCATCATATTTCAAAGTATTGTCAATATTCCCATCTTTGGAAGCAGCTAGGCCGAGGAGCAAATCTGGGATCCAGGCACTATGTTCATTGCATGTGGCATTAGAGAAGGCCAAGAATGTTCTTCAGCATTGTTCGGAGTGTAGTAAGCTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAAGCTAAATGTGCTCTTGAAAATAGTCTTAAAAGGGTGGAAGACATTGTACCACAATCTATTGGATGTCAGATTGAAGAGATAGTGAGTGAACTTGAAAGTATGGCATTGGCACTTGACCCAATGGAGAAGCAAATTGGTGATAATTTAATTACTTTGCTCCAGCAGGGGAGAAAGTTTAACGACACTACTGATAGTAGTGAGCTTGAATGTTTTCACCAGGCTGCTACTAGACTAGGAATCACTTCTTCTAGAGCAGCTCTTACTGAAAGAAGAGCTCTCAAGAAACATATTGAAAGAGCTCGGGCTGAAGATGACAAGCGGAAGGAATCAATTGTTGCATATCTTTTACACCTTATGAGGAAATACTCTAAGTTATTTAGAAGTGAGTTTTCAGACGATAATGATTCTCAGGGTTCTACTCCTTGTTCTCCCACTGTTATGGGATCTATGGAAGATGGTGTTGCTGGTGGTCATTACCTGGCCTTTGACCGACAGCTCTCTAAACTTAGTTCTTTTAATTTTAAGCCAAATAATAGAAGATCAGCGCAAATGCCCCTTCCACCTGAGGAGCTAAGGTGTCCCATATCTCTGCAACTTATGTATGATCCTGTTATAATTGCTTCTGGGCAAACATATGAGAGGGTTTGCATAGAGAAATGGTTCTGCGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTGCGCATCTATCATTGACCCCCAACTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTGTTCCTGATTGCCCTCCGGAATCTCTTGACTTTAACTACTGGAGATTAGCATTATCTCAGTCTGAATCAACAAATTCGAGATCTGTGAACAGTGTCAATTCTTGTAAATTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGACGGGGGTCTCACATGAAGCTGGTGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAAGGGAACAGTTGGAAAAGGAAATGCAAAGTGGTAGAAAGGTTAAGGCTTTTGCTGAGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCGAATGGGTTTGTTGAAGGACTTCTGCATTTTTTGCAGTCAGCAGTGTCTGAAGGGAATGCAACAGCGCAAGAAAGTGGAGCAATGGCCCTCTTTAACCTTGCTGTGAATAACAACAGGAATAAGGAGATCATGTTAGCAGAAGGAGTACTATCATTGCTAGAGGAAATGATCTCTAATTCCTTCTCTTACGGCTGCGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCAGGAGTCAGGCTGTCCAGTTCCTCATTCAGCTCCTCTGTCAACCTGACATTGAAGTCCTTTGCAAGCAAGATTCCCTTCATGCACTGTATAATCTATCCACTGTACCCTCCAATATTCCAAACCTCCTTTCATCTGGCATCATCAATGGCCTTCAATCCCTCCTTGCGGGCCAGGGTGACTCTATCGGGACAGAAAAATGCATAGCTATTTTGATCAATTTGGCTTCTTCTCAGTTGGGAAGGGAGGAAATGATATCATCTCCGGGGCTAATAGGCACGTTGGCTACCATATTGGACACCGGTGAGCTCGTAGAGCAAGAGCAAGCTCTATCTTGTCTACTAATTTTATGCAACGGGAATGACATATGTAGCCAGATGGTCCTGCAAGAAGGCGTAATACCCGCATTGGTGTCATTATCGGTGAATGGTACCTCAAGAGGGAGAGAGAAAGCTCAGAAACTCTTGATGCTGTTTAGAGAGCAACGACAGCGAGACAATTGTCCTCCTAAGACACACCAGTTCCCGCCCGAAACTAGTGATATAGAAATGCCGCCTCCTGAAACAAAACCGCTATGTAAGTCAATGCCTAGGAAAAAAATGGGGAGGGCACTTAGCTTTTTATGGAAAACCAAGAGCTATTCTGTTTATCAGTGTTAG 2298 0.4308 MDIAEIEENMFAASDAKLHGELCKALSASYFKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALENSLKRVEDIVPQSIGCQIEEIVSELESMALALDPMEKQIGDNLITLLQQGRKFNDTTDSSELECFHQAATRLGITSSRAALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTVMGSMEDGVAGGHYLAFDRQLSKLSSFNFKPNNRRSAQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFCDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGVPVPDCPPESLDFNYWRLALSQSESTNSRSVNSVNSCKLKGVKVVPLEETGVSHEAGENGTESVSAQEEDTEQYLSFLKVLTEGNSWKRKCKVVERLRLLLRDDEEARIFMGANGFVEGLLHFLQSAVSEGNATAQESGAMALFNLAVNNNRNKEIMLAEGVLSLLEEMISNSFSYGCATALYLNLSCLEEAKPMIGRSQAVQFLIQLLCQPDIEVLCKQDSLHALYNLSTVPSNIPNLLSSGIINGLQSLLAGQGDSIGTEKCIAILINLASSQLGREEMISSPGLIGTLATILDTGELVEQEQALSCLLILCNGNDICSQMVLQEGVIPALVSLSVNGTSRGREKAQKLLMLFREQRQRDNCPPKTHQFPPETSDIEMPPPETKPLCKSMPRKKMGRALSFLWKTKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0983 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele48g0983 765 Coils Coil 175 195 - -
Lele48g0983 765 PANTHER U BOX DOMAIN-CONTAINING 28 709 - -
Lele48g0983 765 CDD RING-Ubox_PUB 283 325 IPR045210 -
Lele48g0983 765 Gene3D - 422 606 IPR011989 -
Lele48g0983 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Lele48g0983 765 SUPERFAMILY ARM repeat 429 706 IPR016024 -
Lele48g0983 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lele48g0983 765 Gene3D - 607 711 IPR011989 -
Lele48g0983 765 SUPERFAMILY RING/U-box 277 357 - -
Lele48g0983 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele48g0983 765 MobiDBLite consensus disorder prediction 712 741 - -
Lele48g0983 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lele48g0983 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0983 Lele-ChrLele48 14890815 14894598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0983 1 764 U-box Gene Family AT1G24330 66.624 0.0 1029