Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0960 ATGAGTAATAATACGTTATCTTCTCGACGCGATGCTTTCCCGGCCGGTCTCCGAGTTCTTGTCGTCGACGACGACTTGACGTGGCTCAGGATTCTTGAGAAGATGCTGAAGAAGTGCTCTTACGAAGTGACCACATGTTGTTTAGCAAGAGAGGCTCTAAATTTGCTTCGTGAAAGGAAAGATGGATATGACATTGTGATAAGCGATGTAAATATGCCGGACATGGATGGTTTTAAACTTCTCGAGCATGTCGGACTTGAGATGGATCTTCCTGTGATCATGATGTCTGTGGATGGAGAAACAAGGAGGGTGATGAAGGGAGTTCAGCATGGAGCATGTGATTACCTCCTCAAGCCTATAAGGATGAAAGAGCTGAGAAATATATGGCAACATGTGTTCAGAAAAAGGATGCGCGAGGCAAGAGAATTTGGAAGTCTTAAGGGTTTTGAGGGCTTTCAATTAATGAGAAATGGAGCAGATCAGTTTGATGAAGGGAACTTATTTGCTATAGAAGATATGACCCCAACTAAGAAAAGAAAAAACCCAGATAGCAAACGTGATAACAAGGAATTTGGAGATCAATCTTCCACAAAGAAAGCCAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAATTTGTCAAGGCTGTGAATCAGCTTGGATTTGATAAAGTTGGCCCCAAGAAAATTCTTGATTTGATGAATGTTCCCTGGTTGACTCGGGATAATGTTGCTAGCCACTTACAGAAATACCGGCTCTATTTGAGTAGGTTGCAGAAGGATGGAGATAAAAATTCTTCGACAAGTGGGATTCAACATTCTTCCTCAGGTGGGATTGAGCATTCGGATTTAGTTTCGAAAGATCCTGCAGGAAGTTTCTCTTTTCAGAACCCAACAGACAGGCAACAAAATGATGTTTCAATTGACAGCCAAAGATATTCAGATGGAACGTTACAACTTCAGAATGTGGATGCCATAAGTCATGAAACTAATCTCAAGGGAATAATCTCAGAGGCTTCCATGGATAAAAGAACAGAAATGACTACCAACTTTCAAGAAACAAATATAAGAAAGAGTGCACAGAAGATCAATGATCAGTCTTTTGCACCTCCAAATTCAGAAGTAAGCCACGCCGCAGCATTTGAGTGCACCAACCCTTGGAGGGCAATCTCAGAAATGCAACTCAAAAAACATCAGCCATATCTTCCAACTAAGGATCGCTTCAGCCACTTACCATTACATGGTACAGAGCATCTTATCCAGGTTGATAAATCACAAGCAGATGCTTCAATTAGATCCGACCCATCATCCGTAGTAATGGAGAGAGAAACTGCTGCCGGTATTGAAACCAACCCTTTATATGCTGATTACACCAACGATTGCGCCGGTTCTGTTAGTTCCATAGGAAGTGCTGGTGGCTTTTCTATGCAGTCCAAGAGCTTTATGGGGAACGATCAATCTTTAGAATCAGTTTCTATTTCAAATTTGGGCAGGATAACAGAGGGGTTTAATCTGAACTCTGTTTCTGACCTGGAATTTCACCAAAGAAACCTACTTTTAGAAGGCGAGTTCGCTTCTTCTGCACCTTTGGAGGAGGAATTGAAATCGTTGTGGCTACAAGGTGAACGCTGTGGGAACTCTGGACTGCAGAATACAGAGATGCCAGAGTATTATTATGATCCAGGACTAACTGGGGAAGTTCCTGTAGGAAATATTGAGAATTAA 1722 0.4193 MSNNTLSSRRDAFPAGLRVLVVDDDLTWLRILEKMLKKCSYEVTTCCLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETRRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMREAREFGSLKGFEGFQLMRNGADQFDEGNLFAIEDMTPTKKRKNPDSKRDNKEFGDQSSTKKARVVWSVDLHQKFVKAVNQLGFDKVGPKKILDLMNVPWLTRDNVASHLQKYRLYLSRLQKDGDKNSSTSGIQHSSSGGIEHSDLVSKDPAGSFSFQNPTDRQQNDVSIDSQRYSDGTLQLQNVDAISHETNLKGIISEASMDKRTEMTTNFQETNIRKSAQKINDQSFAPPNSEVSHAAAFECTNPWRAISEMQLKKHQPYLPTKDRFSHLPLHGTEHLIQVDKSQADASIRSDPSSVVMERETAAGIETNPLYADYTNDCAGSVSSIGSAGGFSMQSKSFMGNDQSLESVSISNLGRITEGFNLNSVSDLEFHQRNLLLEGEFASSAPLEEELKSLWLQGERCGNSGLQNTEMPEYYYDPGLTGEVPVGNIEN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0960 573 MobiDBLite consensus disorder prediction 260 305 - -
Lele48g0960 573 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Lele48g0960 573 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 321 IPR045279 GO:0009736
Lele48g0960 573 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Lele48g0960 573 MobiDBLite consensus disorder prediction 173 194 - -
Lele48g0960 573 PIRSF RR_ARR_type-B 1 560 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele48g0960 573 MobiDBLite consensus disorder prediction 288 305 - -
Lele48g0960 573 MobiDBLite consensus disorder prediction 171 194 - -
Lele48g0960 573 CDD REC_typeB_ARR-like 19 133 - -
Lele48g0960 573 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Lele48g0960 573 FunFam Two-component response regulator 195 258 - -
Lele48g0960 573 Gene3D - 17 172 - -
Lele48g0960 573 Gene3D - 195 258 - -
Lele48g0960 573 SMART REC_2 17 129 IPR001789 GO:0000160
Lele48g0960 573 MobiDBLite consensus disorder prediction 260 280 - -
Lele48g0960 573 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Lele48g0960 573 SUPERFAMILY CheY-like 16 140 IPR011006 -
Lele48g0960 573 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0960 Lele-ChrLele48 14732060 14735533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0960 11 257 Response Regulator Gene Family AT2G25180 56.126 5.40e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele48g0960 Response_reg 1.7e-23 CL0304