Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0942 ATGGAGCGTTACGGCCGGACCAGTGAAGGATCGCAGTCTGATCCGTCACCGGAATGGACCGGAACGGGAGGCGAAACAGGGCTAGAAGAGTCAGTGTGGCAATTGGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAGGCTGATTGTATCTACTATTTGAGGACTGGTTTTTGTGGGTACGGCTCCCGATGTCGGTTCAATCATCCCCGAGACCGTGGCGCGGTTATTGGAGCTGCGAGGCCGGGAGGGGAGTACCCAGAACGAGTAGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCTTGCAAATTTGGTCCCTCCTGCAAGTATCACCATCCTAGGCAGGGAAGAGGCACTGTTGGTCACGTGTCACTAAATTATTATGGATATCCAATGCGACCGGGGGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGCGCAACTTGTAAATTCCACCATCCTCAGCCTGATGGCATGCAAATTCCAGCACAAACACCAGTTCCACCCGTTTCACCTCTATCTGTACCAGTACCTTCGCCATTATATCCAACCGTACAACCTCCATCTGGCCCTTTATCATCACAATATGGTGTAATGGTTGCAACTCCTAGGCCACCTCTGCTACCTGGCTCATTAGTCCATAGTCCCTATGGGCACGTGGTTTTGTCCCCAGCTGTAGTCCCTTTTCCAGGTTGGAGTCCTTATCAGCCTCCTGGAAGCCCCTTAGTTCCCTCAAGTACTCCATCTAATGTTGGTTCGGCACCGCTTTATGGGATAGGCCAGCTACCATCATCAGCATCGACTTATACTGGACAGTATCAACCTTCAGGCTCCTCAGTTGGTCCTTCGGGAAGTAGTCAGAAGGAACACTCGTTTCCAGAAAGACCTGATCAACCAGAGTGTCACTATTATATGAAAACGGGGGAGTGCAAATTTGGTCCATCATGTAGATATCATCATCCACCTGAATTAGCTGCTCCAAAAGCAAATGTGGTCCTTCCTTTGCGCCCGGGTGCACCTACTTGCACTCATTATGCGCAGCGTGGGGTCTGTAAATTTGGCCTGGCATGCAAATTTGATCATCCTATTGGAGCACTGAGTTATAGTCCGTCTGCTTCATCCTTAGCTGATATGCCAGTTGCGCCCTCATCAATGGGCACTCTTGCTCCGCCGTCTTCATCATCAGAATTGCGACCTGAACTCACCTCAGGATCTGGCAAGGAGTCCACATCGTCCAGAATATCTTCGTCAATGAGCACATCAACGGCATCGGTTGGCTTGGCCTTGTCATCTGATGGATCCTTTTCTCAATCAACTGCTCAACAATCTGCTCAGAGTTCCAGTCCTTCAGCAATCACCAATAGCACCACCACAAGTAGCTCCGTCCCTCACACCTCTAGTTAA 1431 0.5024 MERYGRTSEGSQSDPSPEWTGTGGETGLEESVWQLELGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARPGGEYPERVGQPVCQYYMRTGSCKFGPSCKYHHPRQGRGTVGHVSLNYYGYPMRPGEKECSYYVKTGQCKFGATCKFHHPQPDGMQIPAQTPVPPVSPLSVPVPSPLYPTVQPPSGPLSSQYGVMVATPRPPLLPGSLVHSPYGHVVLSPAVVPFPGWSPYQPPGSPLVPSSTPSNVGSAPLYGIGQLPSSASTYTGQYQPSGSSVGPSGSSQKEHSFPERPDQPECHYYMKTGECKFGPSCRYHHPPELAAPKANVVLPLRPGAPTCTHYAQRGVCKFGLACKFDHPIGALSYSPSASSLADMPVAPSSMGTLAPPSSSSELRPELTSGSGKESTSSRISSSMSTSTASVGLALSSDGSFSQSTAQQSAQSSSPSAITNSTTTSSSVPHTSS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0942 476 Gene3D - 124 170 - -
Lele48g0942 476 MobiDBLite consensus disorder prediction 391 476 - -
Lele48g0942 476 MobiDBLite consensus disorder prediction 277 307 - -
Lele48g0942 476 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Lele48g0942 476 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Lele48g0942 476 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Lele48g0942 476 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Lele48g0942 476 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Lele48g0942 476 SMART c3hfinal6 345 372 IPR000571 GO:0046872
Lele48g0942 476 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Lele48g0942 476 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Lele48g0942 476 Gene3D - 44 123 - -
Lele48g0942 476 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Lele48g0942 476 PANTHER PROTEIN PHOSPHATASE RELATED 34 399 - -
Lele48g0942 476 ProSiteProfiles Zinc finger C3H1-type profile. 345 373 IPR000571 GO:0046872
Lele48g0942 476 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Lele48g0942 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Lele48g0942 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Lele48g0942 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Lele48g0942 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Lele48g0942 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 371 IPR000571 GO:0046872
Lele48g0942 476 SUPERFAMILY CCCH zinc finger 138 166 IPR036855 GO:0046872
Lele48g0942 476 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Lele48g0942 476 SUPERFAMILY CCCH zinc finger 348 375 IPR036855 GO:0046872
Lele48g0942 476 Gene3D - 304 377 - -
Lele48g0942 476 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872
Lele48g0942 476 MobiDBLite consensus disorder prediction 1 31 - -
Lele48g0942 476 MobiDBLite consensus disorder prediction 277 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0942 Lele-ChrLele48 14562364 14568288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0942 1 428 C2H2 Transcription Factor Family AT5G18550 55.385 2.83e-146 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele48g0942 zf-CCCH 2.9e-07 CL0537