LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g0941	ATGTCCACCACCTCTAGAACCCTAGATTCTTCTTCTTCCTCATCATCATTCAAAGGCTATGAAGCAAACCAGACCCAGATGGTTCTGTCTCTTCTTCAGAGAAACACATCTCCTTGTGGTGGTGAGAAAAGAGGAAGAAGAAAGCAATCAGAACCGGGAAGGTTTCTTGGTGTCAGGAGAAGACCTTGGGGAAGATATGCTGCAGAAATAAGAGACCCCACAACAAAAGAAAGGCATTGGCTTGGAACTTTTGATACTGCTCAAGAAGCTGCTCTGGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCAAGAACAAATTTCATATACTCTGAAACTAACACTAGTTTTCACACTACTCTCTCTCCTTCTTCTTTAGATCTTTATAATCATCATCAACCTCTTTTACCAACCTATCATCAGAATAGTGCTAGTTCAGTAGTATATGATAATATGTCTCATCTTCATCATATTGAGCCTAATAATGATAATATGATGAACAATGACATGCCTGAAACTGAGAACTTTTTCTTGTTTTCCAGTGATTCTTCTTCTAACTCAGGATACTTGGAATGTGTGGTTCCTGATAACTGTCTCAGAAGGAACAATGATGATCAAAAGGGCAAATCTCAAGAACAAGGCATGATCAAGATACCAACAGTAGGATGTGAAAGTTCAGATTTTTCTTCATACCCAGATGAAATCTCTCAGGGATTTTCATGGGATTCTGATTGCAGTGAGCTTTCTGCTATATTCAATAGAAACCCAATGAGGGTTGAAGAAGATGGATACTTCTTCGGGAGTTCTTCAAGCTATGGTGGGCTCATGACTGATCAATATGCTTCAACTTCTTCTTCATATGCCTTTGGAGATGTTGATATGGGATATTCAATGTTCTGA	906	0.3951	MSTTSRTLDSSSSSSSFKGYEANQTQMVLSLLQRNTSPCGGEKRGRRKQSEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYSETNTSFHTTLSPSSLDLYNHHQPLLPTYHQNSASSVVYDNMSHLHHIEPNNDNMMNNDMPETENFFLFSSDSSSNSGYLECVVPDNCLRRNNDDQKGKSQEQGMIKIPTVGCESSDFSSYPDEISQGFSWDSDCSELSAIFNRNPMRVEEDGYFFGSSSSYGGLMTDQYASTSSSYAFGDVDMGYSMF	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g0941	301	CDD	AP2	54	110	IPR001471	GO:0003700\|GO:0006355
	Lele48g0941	301	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	37	201	-	-
	Lele48g0941	301	Gene3D	AP2/ERF domain	54	112	IPR036955	GO:0003700\|GO:0006355
	Lele48g0941	301	ProSiteProfiles	AP2/ERF domain profile.	54	111	IPR001471	GO:0003700\|GO:0006355
	Lele48g0941	301	PRINTS	Ethylene responsive element binding protein signature	55	66	IPR001471	GO:0003700\|GO:0006355
	Lele48g0941	301	PRINTS	Ethylene responsive element binding protein signature	77	93	IPR001471	GO:0003700\|GO:0006355
	Lele48g0941	301	SMART	rav1_2	54	117	IPR001471	GO:0003700\|GO:0006355
	Lele48g0941	301	MobiDBLite	consensus disorder prediction	40	54	-	-
	Lele48g0941	301	SUPERFAMILY	DNA-binding domain	55	112	IPR016177	GO:0003677
	Lele48g0941	301	FunFam	Ethylene-responsive transcription factor 2	54	112	-	-
	Lele48g0941	301	MobiDBLite	consensus disorder prediction	35	54	-	-
	Lele48g0941	301	Pfam	AP2 domain	57	103	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g0941	Lele-ChrLele48	14557183	14558088	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g0941	3	294	AP2-EREBP Transcription Factor Family	AT5G18560	37.119	2.82e-58	189

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele48g0941		AP2	1.2e-12	CL0081