Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele48g0931 | ATGGCTCCATGCCTCTTTGAGGATCACGACAATCCATTCCCACCCTTCTTCCCAAATCAGGAAACCCTTCCCCTTCCCCGTCTCTCAGAGCCTTCCCTTTTCCCTCTCTTCCAATTCTCATGGAGGGCTCTGCCAATGAACGCCTTCACTTCGGCAAAATGGGATACGGGTCCGCATATATATATATATCCTTCTGCTTCTTGTTCATTGATTGATTTCGTCGTCTTTGATGTTGTTTGCATTGCTTATTTGTTGATCTGTGAATGTCTACTTCATAGGTGCAAGCATTATCGGAGAAGATGCATGATTCGAGCTCCTTGTTGCAACGAGATTTACTGGTGTCGTCATTGTCATAACGAGGCAGTGAGCATGTTGAGCAATATCAATGATCGGCATGAACTATTACGCCAAGATATTGAACAAGTTGTTTGTGCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGCGTCATGATGGGAGGATATTTCTGCGAAATCTGCAAATTCTTCGATGATGATACTGGGAAACAAGAGTTTCATTGTGATGATTGTGGGATCTGTAGAGTCGGTGGTCGTCAGAATTATTATCATTGCAAGAAGTGTGGGTCCTGTTATTCAGTTGGCCTGCGTGATAATCATTCTTGTGTAGAGAACTCAATGAGGCATCACTGCCCAATTTGTTATGAGTACCTTTTTGATTCATTGAAAGACACTGCTGTAATGAAATGTGGTCACACAATGCATTGTGAGTGTTACCAAGAGATGATAAAGCGTCACAATTATTGTTGCCCCATATGCTCCAAGTCAGTGATTGATATGTCCAGTACATGGAAGAGAATTGATGAGGAGATTCAAGAAACAGTCATGCCTGAAGATTATCGGGACAGGAAGGTTTGGATACTATGCAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTATTGGGCAAAAATGCGGTCACTGCAGATCATATAATACTCGTAGAATTGCTCCTCCTGTTCTTCCTCAATGA | 1032 | 0.4254 | MAPCLFEDHDNPFPPFFPNQETLPLPRLSEPSLFPLFQFSWRALPMNAFTSAKWDTGPHIYIYPSASCSLIDFVVFDVVCIAYLLICECLLHRCKHYRRRCMIRAPCCNEIYWCRHCHNEAVSMLSNINDRHELLRQDIEQVVCAVCDTEQPVAQVCTNCGVMMGGYFCEICKFFDDDTGKQEFHCDDCGICRVGGRQNYYHCKKCGSCYSVGLRDNHSCVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHCECYQEMIKRHNYCCPICSKSVIDMSSTWKRIDEEIQETVMPEDYRDRKVWILCNDCNDTTEVYFHIIGQKCGHCRSYNTRRIAPPVLPQ | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele48g0931 | 343 | FunFam | RING finger and CHY zinc finger domain-containing protein 1 | 300 | 341 | - | - | |
| Lele48g0931 | 343 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 164 | 228 | IPR017921 | - | |
| Lele48g0931 | 343 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 91 | 340 | - | - | |
| Lele48g0931 | 343 | SUPERFAMILY | RING/U-box | 228 | 276 | - | - | |
| Lele48g0931 | 343 | SUPERFAMILY | Zinc hairpin stack | 166 | 222 | IPR037275 | - | |
| Lele48g0931 | 343 | ProSiteProfiles | Zinc finger RING-type profile. | 229 | 272 | IPR001841 | - | |
| Lele48g0931 | 343 | Gene3D | - | 303 | 339 | - | - | |
| Lele48g0931 | 343 | SUPERFAMILY | CHY zinc finger-like | 92 | 163 | IPR037274 | GO:0008270 | |
| Lele48g0931 | 343 | Pfam | CHY zinc finger | 94 | 174 | IPR008913 | GO:0008270 | |
| Lele48g0931 | 343 | Pfam | Zinc finger, C3HC4 type (RING finger) | 229 | 271 | IPR018957 | GO:0046872 | |
| Lele48g0931 | 343 | Pfam | Zinc-ribbon | 276 | 334 | IPR039512 | - | |
| Lele48g0931 | 343 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 214 | 302 | IPR013083 | - | |
| Lele48g0931 | 343 | ProSiteProfiles | Zinc finger CHY-type profile. | 87 | 162 | IPR008913 | GO:0008270 | |
| Lele48g0931 | 343 | SMART | ring_2 | 229 | 271 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele48g0931 | Lele-ChrLele48 | 14464116 | 14467380 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele48g0931 | 88 | 342 | C2H2 Transcription Factor Family | AT3G18290 | 38.077 | 1.74e-50 | 179 |