Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0930 ATGGAACGTCTCAGAATTGGCTCTGTTAGGCCATTGCCATTGGTTTCTCAACTTCCGCCTCCTTCTGATGAACCTGTTGTTGCAATGGCCGACGCAGGGAAAACTATCTCCGGCAAGCGTAGTAGACAAAAAGGTTTAGAGAGGAGCGAGAGCCTTGACATTGAGCGTGATCCGAGGTTGAAGATGAGTCATATGTTCGCTGAGCTTCAGTCCACCGTCCCTGGTCTCTTCTCCAAGGCCACAAGGGAAACGATTGTGAATGAAACAATAAACTACATCAAGGATCTTGAGAAGAAGAAGAAAAGATTGGAAGAGATTAAGGGGTTAATAATGGAACCAGAAGTAGGTGGAGGGAAGTTGATGCTTCCATGTACAGTCAATAAGAATTCCTCCATTACAGTCTCTGTATCTGGAAATGTTGCATTCTTTGGGATTCAATCAAAAGCTCAATTTGGTTTAATCACAGTGATCTTCAAGGTGTTCTACAAGCACAATGCTGAAATTTTGGCTGCAAATGTTTCTGTCAACAATGGAGAATTGACTTTGGCAATCACAGCTTTATTAGTTCATGATGGGGATAATAATGATGCAAATGTTGCTGCTGAGAAAATCAAGAGAGAGATTCTGGGTCTGTAG 636 0.4245 MERLRIGSVRPLPLVSQLPPPSDEPVVAMADAGKTISGKRSRQKGLERSESLDIERDPRLKMSHMFAELQSTVPGLFSKATRETIVNETINYIKDLEKKKKRLEEIKGLIMEPEVGGGKLMLPCTVNKNSSITVSVSGNVAFFGIQSKAQFGLITVIFKVFYKHNAEILAANVSVNNGELTLAITALLVHDGDNNDANVAAEKIKREILGL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0930 211 Coils Coil 86 106 - -
Lele48g0930 211 Pfam Helix-loop-helix DNA-binding domain 53 97 IPR011598 GO:0046983
Lele48g0930 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 110 IPR036638 GO:0046983
Lele48g0930 211 MobiDBLite consensus disorder prediction 37 52 - -
Lele48g0930 211 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 54 107 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lele48g0930 211 Gene3D - 38 110 IPR036638 GO:0046983
Lele48g0930 211 ProSiteProfiles ACT domain profile. 142 211 IPR002912 -
Lele48g0930 211 MobiDBLite consensus disorder prediction 33 52 - -
Lele48g0930 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Lele48g0930 211 SMART finulus 52 102 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0930 Lele-ChrLele48 14460906 14462192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0930 13 104 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.458 5.39e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele48g0930 HLH 5.8e-05 No_clan