Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0927 ATGGGTTGCGTGTTCGGAAGAGAAGCGTCGGCGAAGTTCTCCGGAGAGACGGTGTCGGAGAGGGAGAAAGCGAGGGAGGAGAGGAAAGAGGAAGTTGCCGCGGCAAAAGCAGAAGTCAGCGAGTTTCAGAATGGTGGGAATCGGAAGGAAGGTGGAGAGGAGAAGAGTACAAGGACAAGAGGGGAACGGCGGCGTTCGTCACGGCCAAATCCAAGGCTGAGCAATCCACCTAACCATGTACACGGTGAGCAATTGGCGGCGGGTTGGCCGTCTTGGCTTTCCGAGGTTGCAGGGGAAGCCATCAACGGGTTAACGCCTAGAAGAGCCGACACTTTTCAAAAGCTCGATAAGATTGGCCAAGGCACATACAGTAATGTATACAAAGCCAGGGACACTATAACTGGGAAAATTGTTGCCTTAAAAAAGGTTCGATTTGACAACTTGGAGCCAGAGAGCGTGAAATTCATGGCTCGAGAGATTCTCATATTACGTCGACTGGATCATCCCAATGTTCTCAAACTGGAAGGTTTAGTGACTTCTAGAATGTCATGTAGCTTGTATCTTGTTTTTCAGTACATGGAGCATGATCTGGCTGGACTTGCTACCAGCCCATCAATTAAGTTCACTGAGCCTCAGGTTAAGTGTTACATGAAGCAGCTGTTTTCTGGTCTGGAACACTGTCACAACCGTCATGTGCTGCATCGAGATATAAAGGGGTCGAACCTTCTCATTGACAATGAAGGGATTCTTAGAATTGCTGATTTTGGATTAGCTTCCTTCTTCGATCCTGATCACAAGCACCCTATGACAAGTAGGGTGGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGATTATGGTGTAGGAGTGGACCTCTGGAGTGCAGGTTGCATTCTTGCAGAATTGTTGGCCGGAAAGCCAATTTTGCCTGGTCGGACAGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAGTATTGGAAAAAGTCAAAGTTGCCTCATGCTACCATTTTTAAGCCCCAACAATCATACAAGCGATGCATATCGGACGTATTCAAAGATTTTCCACCATCATCCTTGCCACTAATTGAGACCCTTCTTGCAATTGATCCAGCCGAACGTCAGACTGCCACTGCTGCATTGCAAAGTGAATTCTTTACTACAAAACCTTATGCTTGTGATCCATCAAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCGAAGCTACGAGATGAAGAAGCTAGAAGATTGAGAGCAGCGGGTAAAGCTAATGCTGATGGTGCTAAGAAATCTCGTCCGCGTGACCGGGGAGGGAGGGGAATTCCAGTTCCAGAAGCCAATGCTGAGCTTCAAGCAAATATTGATAGACGGCGATTGATAACGCATGCAAATGCAAAGAGCAAGAGCGAGAAGTTTCCGCCGCCGCACCAAGATGGAACTCTAGGGTATACTCTAGGTTCTTCTCATCTCATGGATCCAGTTTTTGATCCTCCTGATGTTTCATTCAGCTCTACCAACTTGTCGTACCCAAAGACCAATATTCAAACATGGTCTGGTCCATTGGTGGAAACTGCTGCCCCAAGGAGAAAGAAGAACTTGGCAGGCGAATCGAAGTCTTCGTTGAAGAAGGACTCAAGAAGATAA 1680 0.472 MGCVFGREASAKFSGETVSEREKAREERKEEVAAAKAEVSEFQNGGNRKEGGEEKSTRTRGERRRSSRPNPRLSNPPNHVHGEQLAAGWPSWLSEVAGEAINGLTPRRADTFQKLDKIGQGTYSNVYKARDTITGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVLKLEGLVTSRMSCSLYLVFQYMEHDLAGLATSPSIKFTEPQVKCYMKQLFSGLEHCHNRHVLHRDIKGSNLLIDNEGILRIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPILPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCISDVFKDFPPSSLPLIETLLAIDPAERQTATAALQSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGAKKSRPRDRGGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGTLGYTLGSSHLMDPVFDPPDVSFSSTNLSYPKTNIQTWSGPLVETAAPRRKKNLAGESKSSLKKDSRR 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0927 559 Coils Coil 18 38 - -
Lele48g0927 559 FunFam probable serine/threonine-protein kinase At1g54610 195 436 - -
Lele48g0927 559 MobiDBLite consensus disorder prediction 512 532 - -
Lele48g0927 559 MobiDBLite consensus disorder prediction 1 83 - -
Lele48g0927 559 PANTHER CELL DIVISION PROTEIN KINASE 110 400 - -
Lele48g0927 559 MobiDBLite consensus disorder prediction 541 559 - -
Lele48g0927 559 MobiDBLite consensus disorder prediction 14 36 - -
Lele48g0927 559 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g0927 559 MobiDBLite consensus disorder prediction 430 497 - -
Lele48g0927 559 Gene3D Phosphorylase Kinase; domain 1 100 194 - -
Lele48g0927 559 MobiDBLite consensus disorder prediction 463 485 - -
Lele48g0927 559 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g0927 559 FunFam probable serine/threonine-protein kinase At1g54610 99 194 - -
Lele48g0927 559 Gene3D Transferase(Phosphotransferase) domain 1 195 435 - -
Lele48g0927 559 MobiDBLite consensus disorder prediction 47 69 - -
Lele48g0927 559 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Lele48g0927 559 CDD STKc_CDK9_like 112 396 - -
Lele48g0927 559 MobiDBLite consensus disorder prediction 430 451 - -
Lele48g0927 559 MobiDBLite consensus disorder prediction 512 559 - -
Lele48g0927 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Lele48g0927 559 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Lele48g0927 559 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0927 Lele-ChrLele48 14435964 14440036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0927 107 434 Core Cell Cycle Gene Families AT5G10270 52.326 1.57e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele48g0927 Pkinase 9.7e-67 CL0016